Strain Fitness in Pseudomonas putida KT2440 around PP_0041

Experiment: pH 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0039 and PP_0040 are separated by 127 nucleotidesPP_0040 and PP_0041 are separated by 92 nucleotidesPP_0041 and PP_0042 are separated by 202 nucleotidesPP_0042 and PP_0043 are separated by 162 nucleotides PP_0039: PP_0039 - hypothetical protein, at 42,057 to 43,082 _0039 PP_0040: PP_0040 - hypothetical protein, at 43,210 to 43,434 _0040 PP_0041: PP_0041 - cadmium translocating P-type ATPase, at 43,527 to 45,524 _0041 PP_0042: PP_0042 - conserved exported protein of unknown function, at 45,727 to 46,050 _0042 PP_0043: PP_0043 - cation efflux system protein, at 46,213 to 49,374 _0043 Position (kb) 43 44 45 46Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 42.615 kb on + strand, within PP_0039at 42.615 kb on + strand, within PP_0039at 42.615 kb on + strand, within PP_0039at 42.616 kb on - strand, within PP_0039at 42.625 kb on + strand, within PP_0039at 42.757 kb on - strand, within PP_0039at 42.795 kb on + strand, within PP_0039at 42.795 kb on + strand, within PP_0039at 42.795 kb on + strand, within PP_0039at 42.932 kb on + strand, within PP_0039at 42.933 kb on - strand, within PP_0039at 42.951 kb on + strand, within PP_0039at 42.951 kb on + strand, within PP_0039at 42.952 kb on - strand, within PP_0039at 42.952 kb on - strand, within PP_0039at 42.952 kb on - strand, within PP_0039at 42.952 kb on - strand, within PP_0039at 42.999 kb on + strandat 43.009 kb on + strandat 43.009 kb on + strandat 43.009 kb on + strandat 43.009 kb on + strandat 43.009 kb on + strandat 43.010 kb on - strandat 43.076 kb on + strandat 43.076 kb on + strandat 43.076 kb on + strandat 43.077 kb on - strandat 43.077 kb on - strandat 43.126 kb on + strandat 43.127 kb on - strandat 43.127 kb on - strandat 43.205 kb on + strandat 43.205 kb on + strandat 43.206 kb on - strandat 43.206 kb on - strandat 43.206 kb on - strandat 43.206 kb on - strandat 43.206 kb on - strandat 43.206 kb on - strandat 43.209 kb on + strandat 43.209 kb on + strandat 43.210 kb on - strandat 43.210 kb on - strandat 43.273 kb on + strand, within PP_0040at 43.273 kb on + strand, within PP_0040at 43.274 kb on - strand, within PP_0040at 43.274 kb on - strand, within PP_0040at 43.368 kb on - strand, within PP_0040at 43.444 kb on - strandat 43.474 kb on + strandat 43.474 kb on + strandat 43.474 kb on + strandat 43.480 kb on + strandat 43.480 kb on + strandat 43.481 kb on - strandat 43.502 kb on + strandat 43.502 kb on + strandat 43.502 kb on + strandat 43.502 kb on + strandat 43.502 kb on + strandat 43.502 kb on + strandat 43.503 kb on - strandat 43.503 kb on - strandat 43.503 kb on - strandat 43.503 kb on - strandat 43.543 kb on + strandat 43.751 kb on + strand, within PP_0041at 43.751 kb on + strand, within PP_0041at 43.941 kb on + strand, within PP_0041at 43.941 kb on + strand, within PP_0041at 43.941 kb on + strand, within PP_0041at 43.942 kb on - strand, within PP_0041at 43.942 kb on - strand, within PP_0041at 43.942 kb on - strand, within PP_0041at 43.960 kb on - strand, within PP_0041at 43.960 kb on - strand, within PP_0041at 44.024 kb on + strand, within PP_0041at 44.024 kb on + strand, within PP_0041at 44.024 kb on + strand, within PP_0041at 44.025 kb on - strand, within PP_0041at 44.025 kb on - strand, within PP_0041at 44.025 kb on - strand, within PP_0041at 44.070 kb on + strand, within PP_0041at 44.120 kb on + strand, within PP_0041at 44.121 kb on - strand, within PP_0041at 44.137 kb on - strand, within PP_0041at 44.137 kb on - strand, within PP_0041at 44.180 kb on + strand, within PP_0041at 44.181 kb on - strand, within PP_0041at 44.181 kb on - strand, within PP_0041at 44.380 kb on - strand, within PP_0041at 44.406 kb on + strand, within PP_0041at 44.407 kb on - strand, within PP_0041at 44.412 kb on + strand, within PP_0041at 44.412 kb on + strand, within PP_0041at 44.413 kb on - strand, within PP_0041at 44.415 kb on + strand, within PP_0041at 44.415 kb on + strand, within PP_0041at 44.415 kb on + strand, within PP_0041at 44.415 kb on + strand, within PP_0041at 44.416 kb on - strand, within PP_0041at 44.416 kb on - strand, within PP_0041at 44.416 kb on - strand, within PP_0041at 44.416 kb on - strand, within PP_0041at 44.416 kb on - strand, within PP_0041at 44.416 kb on - strand, within PP_0041at 44.416 kb on - strand, within PP_0041at 44.416 kb on - strand, within PP_0041at 44.416 kb on - strand, within PP_0041at 44.416 kb on - strand, within PP_0041at 44.426 kb on + strand, within PP_0041at 44.426 kb on + strand, within PP_0041at 44.426 kb on + strand, within PP_0041at 44.426 kb on + strand, within PP_0041at 44.426 kb on + strand, within PP_0041at 44.427 kb on - strand, within PP_0041at 44.570 kb on + strand, within PP_0041at 44.570 kb on + strand, within PP_0041at 44.668 kb on - strand, within PP_0041at 44.688 kb on + strand, within PP_0041at 44.706 kb on + strand, within PP_0041at 44.707 kb on - strand, within PP_0041at 44.707 kb on - strand, within PP_0041at 44.792 kb on + strand, within PP_0041at 44.793 kb on - strand, within PP_0041at 44.814 kb on + strandat 44.969 kb on + strand, within PP_0041at 44.970 kb on - strand, within PP_0041at 44.982 kb on + strand, within PP_0041at 44.982 kb on + strand, within PP_0041at 44.982 kb on + strand, within PP_0041at 44.982 kb on + strand, within PP_0041at 44.983 kb on - strand, within PP_0041at 44.983 kb on - strand, within PP_0041at 44.983 kb on - strand, within PP_0041at 44.983 kb on - strand, within PP_0041at 44.988 kb on + strand, within PP_0041at 44.989 kb on - strand, within PP_0041at 45.090 kb on + strand, within PP_0041at 45.091 kb on - strand, within PP_0041at 45.157 kb on + strand, within PP_0041at 45.293 kb on + strand, within PP_0041at 45.305 kb on + strand, within PP_0041at 45.332 kb on - strandat 45.332 kb on - strandat 45.332 kb on - strandat 45.343 kb on + strandat 45.344 kb on - strandat 45.344 kb on - strandat 45.344 kb on - strandat 45.344 kb on - strandat 45.473 kb on + strandat 45.474 kb on - strandat 45.525 kb on - strandat 45.525 kb on - strandat 45.595 kb on + strandat 45.602 kb on + strandat 45.602 kb on + strandat 45.646 kb on - strandat 45.815 kb on + strand, within PP_0042at 45.815 kb on + strand, within PP_0042at 45.815 kb on + strand, within PP_0042at 45.816 kb on - strand, within PP_0042at 45.828 kb on + strand, within PP_0042at 45.829 kb on - strand, within PP_0042at 45.868 kb on + strand, within PP_0042at 45.868 kb on + strand, within PP_0042at 45.869 kb on - strand, within PP_0042at 45.881 kb on + strand, within PP_0042at 45.882 kb on - strand, within PP_0042at 45.882 kb on - strand, within PP_0042at 45.962 kb on + strand, within PP_0042at 45.963 kb on - strand, within PP_0042at 46.089 kb on + strandat 46.090 kb on - strandat 46.214 kb on + strandat 46.215 kb on - strandat 46.219 kb on - strandat 46.268 kb on + strandat 46.268 kb on + strandat 46.268 kb on + strandat 46.283 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 7
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42,615 + PP_0039 0.54 +1.1
42,615 + PP_0039 0.54 -0.5
42,615 + PP_0039 0.54 -0.9
42,616 - PP_0039 0.54 -3.1
42,625 + PP_0039 0.55 -1.1
42,757 - PP_0039 0.68 +1.4
42,795 + PP_0039 0.72 -0.6
42,795 + PP_0039 0.72 +1.8
42,795 + PP_0039 0.72 -0.9
42,932 + PP_0039 0.85 -0.1
42,933 - PP_0039 0.85 +0.5
42,951 + PP_0039 0.87 -2.6
42,951 + PP_0039 0.87 -0.2
42,952 - PP_0039 0.87 +0.8
42,952 - PP_0039 0.87 -0.6
42,952 - PP_0039 0.87 +4.3
42,952 - PP_0039 0.87 -0.2
42,999 + +0.8
43,009 + -1.5
43,009 + -1.0
43,009 + -2.1
43,009 + +0.2
43,009 + -1.9
43,010 - -1.8
43,076 + -0.2
43,076 + +0.8
43,076 + +0.0
43,077 - -0.6
43,077 - -2.0
43,126 + -1.0
43,127 - -3.1
43,127 - +0.7
43,205 + -2.5
43,205 + -0.7
43,206 - -0.2
43,206 - -2.3
43,206 - -0.2
43,206 - +1.1
43,206 - +2.8
43,206 - -2.5
43,209 + +0.8
43,209 + -1.4
43,210 - +0.7
43,210 - +0.8
43,273 + PP_0040 0.28 +0.8
43,273 + PP_0040 0.28 -0.9
43,274 - PP_0040 0.28 +0.8
43,274 - PP_0040 0.28 +1.1
43,368 - PP_0040 0.70 -0.7
43,444 - +0.4
43,474 + +0.9
43,474 + -2.0
43,474 + -1.0
43,480 + -0.2
43,480 + +0.8
43,481 - -1.8
43,502 + -0.7
43,502 + -0.3
43,502 + -2.4
43,502 + -0.5
43,502 + -0.1
43,502 + -1.0
43,503 - -0.2
43,503 - +0.2
43,503 - -1.4
43,503 - +0.8
43,543 + -2.6
43,751 + PP_0041 0.11 -0.2
43,751 + PP_0041 0.11 +0.1
43,941 + PP_0041 0.21 -2.9
43,941 + PP_0041 0.21 -2.8
43,941 + PP_0041 0.21 +0.2
43,942 - PP_0041 0.21 +1.8
43,942 - PP_0041 0.21 +0.1
43,942 - PP_0041 0.21 -0.4
43,960 - PP_0041 0.22 -2.2
43,960 - PP_0041 0.22 -1.9
44,024 + PP_0041 0.25 -1.5
44,024 + PP_0041 0.25 -2.1
44,024 + PP_0041 0.25 -0.4
44,025 - PP_0041 0.25 -0.5
44,025 - PP_0041 0.25 -1.7
44,025 - PP_0041 0.25 -1.9
44,070 + PP_0041 0.27 -1.5
44,120 + PP_0041 0.30 +0.3
44,121 - PP_0041 0.30 -0.8
44,137 - PP_0041 0.31 -1.5
44,137 - PP_0041 0.31 -0.6
44,180 + PP_0041 0.33 +0.8
44,181 - PP_0041 0.33 +0.8
44,181 - PP_0041 0.33 -2.8
44,380 - PP_0041 0.43 -1.8
44,406 + PP_0041 0.44 -3.4
44,407 - PP_0041 0.44 +0.8
44,412 + PP_0041 0.44 -2.6
44,412 + PP_0041 0.44 +1.3
44,413 - PP_0041 0.44 -3.5
44,415 + PP_0041 0.44 +0.8
44,415 + PP_0041 0.44 -2.2
44,415 + PP_0041 0.44 -0.3
44,415 + PP_0041 0.44 +0.8
44,416 - PP_0041 0.44 +0.2
44,416 - PP_0041 0.44 +0.1
44,416 - PP_0041 0.44 +3.8
44,416 - PP_0041 0.44 -0.2
44,416 - PP_0041 0.44 -0.2
44,416 - PP_0041 0.44 -0.5
44,416 - PP_0041 0.44 -0.3
44,416 - PP_0041 0.44 -0.4
44,416 - PP_0041 0.44 -0.6
44,416 - PP_0041 0.44 -1.4
44,426 + PP_0041 0.45 -0.5
44,426 + PP_0041 0.45 +3.1
44,426 + PP_0041 0.45 +0.8
44,426 + PP_0041 0.45 +0.1
44,426 + PP_0041 0.45 -1.8
44,427 - PP_0041 0.45 +0.4
44,570 + PP_0041 0.52 +1.2
44,570 + PP_0041 0.52 -1.2
44,668 - PP_0041 0.57 -0.2
44,688 + PP_0041 0.58 +2.4
44,706 + PP_0041 0.59 -2.6
44,707 - PP_0041 0.59 +0.8
44,707 - PP_0041 0.59 -2.5
44,792 + PP_0041 0.63 -0.1
44,793 - PP_0041 0.63 +3.3
44,814 + +0.8
44,969 + PP_0041 0.72 +1.4
44,970 - PP_0041 0.72 +0.3
44,982 + PP_0041 0.73 +0.1
44,982 + PP_0041 0.73 -0.5
44,982 + PP_0041 0.73 +3.1
44,982 + PP_0041 0.73 -3.1
44,983 - PP_0041 0.73 +0.0
44,983 - PP_0041 0.73 +0.0
44,983 - PP_0041 0.73 -3.2
44,983 - PP_0041 0.73 -0.8
44,988 + PP_0041 0.73 +0.4
44,989 - PP_0041 0.73 -0.2
45,090 + PP_0041 0.78 -0.9
45,091 - PP_0041 0.78 -0.9
45,157 + PP_0041 0.82 +0.1
45,293 + PP_0041 0.88 +1.7
45,305 + PP_0041 0.89 -1.4
45,332 - -0.1
45,332 - +1.5
45,332 - -2.2
45,343 + -2.6
45,344 - -1.3
45,344 - +0.8
45,344 - +0.1
45,344 - -3.1
45,473 + -0.1
45,474 - -0.9
45,525 - +0.2
45,525 - +2.8
45,595 + -1.3
45,602 + -1.5
45,602 + -3.7
45,646 - +0.8
45,815 + PP_0042 0.27 -1.3
45,815 + PP_0042 0.27 +2.1
45,815 + PP_0042 0.27 +0.8
45,816 - PP_0042 0.27 -2.5
45,828 + PP_0042 0.31 -0.3
45,829 - PP_0042 0.31 -0.0
45,868 + PP_0042 0.44 -0.7
45,868 + PP_0042 0.44 -0.7
45,869 - PP_0042 0.44 -2.3
45,881 + PP_0042 0.48 +0.5
45,882 - PP_0042 0.48 +0.8
45,882 - PP_0042 0.48 -0.8
45,962 + PP_0042 0.73 +0.8
45,963 - PP_0042 0.73 -1.6
46,089 + -1.9
46,090 - -3.7
46,214 + +1.0
46,215 - -1.5
46,219 - +0.7
46,268 + +3.0
46,268 + +1.3
46,268 + -1.1
46,283 - -0.5

Or see this region's nucleotide sequence