Strain Fitness in Pseudomonas putida KT2440 around PP_5737

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
6,150,894	-				+2.0
6,150,923	-				+1.1
6,150,948	+				+0.9
6,150,949	-				+0.3
6,150,965	+				-0.8
6,151,009	+				-2.0
6,151,010	-				-0.4
6,151,025	+				-1.5
6,151,026	-				-0.9
6,151,026	-				+0.6
6,151,030	+				-0.6
6,151,030	+				-2.9
6,151,030	+				+2.1
6,151,031	-				-1.8
6,151,083	+		PP_5395	0.11	-2.5
6,151,083	+		PP_5395	0.11	+0.1
6,151,084	-		PP_5395	0.11	-1.5
6,151,084	-		PP_5395	0.11	-1.4
6,151,101	-		PP_5395	0.13	+5.3
6,151,119	+		PP_5395	0.15	-0.6
6,151,120	-		PP_5395	0.15	+0.8
6,151,177	+		PP_5395	0.22	-0.6
6,151,177	+		PP_5395	0.22	-2.4
6,151,214	-		PP_5395	0.26	-1.8
6,151,214	-		PP_5395	0.26	-0.1
6,151,214	-		PP_5395	0.26	-0.4
6,151,221	+		PP_5395	0.27	+0.1
6,151,221	+		PP_5395	0.27	+0.5
6,151,222	-		PP_5395	0.27	-0.1
6,151,276	+		PP_5395	0.34	+3.1
6,151,329	+		PP_5395	0.40	+2.4
6,151,349	-		PP_5395	0.42	+1.3
6,151,371	+		PP_5395	0.45	-0.4
6,151,372	-		PP_5395	0.45	+0.2
6,151,385	+		PP_5395	0.47	-0.8
6,151,385	+		PP_5395	0.47	-1.8
6,151,386	-		PP_5395	0.47	-0.2
6,151,535	+		PP_5395	0.64	+0.3
6,151,535	+		PP_5395	0.64	-2.4
6,151,536	-		PP_5395	0.65	-0.5
6,151,563	+		PP_5395	0.68	+0.7
6,151,563	+		PP_5395	0.68	+1.3
6,151,570	+		PP_5395	0.69	+2.3
6,151,600	-		PP_5395	0.72	-0.5
6,151,716	+		PP_5395	0.86	+0.2
6,151,740	+		PP_5395	0.89	-0.8
6,151,740	+		PP_5395	0.89	+0.7
6,151,740	+		PP_5395	0.89	-1.3
6,151,740	+		PP_5395	0.89	+0.2
6,151,797	+				-1.8
6,151,833	+				+1.0
6,151,834	-				-0.2
6,151,875	-				-1.3
6,151,899	-		PP_5737	0.12	+0.1
6,151,905	+		PP_5737	0.13	-3.5
6,151,906	-		PP_5737	0.14	-1.8
6,152,013	+		PP_5737	0.32	-3.1
6,152,013	+		PP_5737	0.32	+3.1
6,152,014	-		PP_5737	0.32	-2.9
6,152,098	+		PP_5737	0.47	-1.1
6,152,139	+		PP_5737	0.54	-0.4
6,152,140	-		PP_5737	0.54	+1.7
6,152,147	+		PP_5737	0.55	-0.5
6,152,147	+		PP_5737	0.55	-1.2
6,152,148	-		PP_5737	0.56	-2.9
6,152,148	-		PP_5737	0.56	-1.7
6,152,231	+		PP_5737	0.70	-0.1
6,152,231	+		PP_5737	0.70	-0.4
6,152,231	+		PP_5737	0.70	-1.0
6,152,232	-		PP_5737	0.70	-1.8
6,152,264	-		PP_5737	0.76	-0.1
6,152,299	+		PP_5737	0.82	-0.2
6,152,300	-		PP_5737	0.82	+1.6
6,152,300	-		PP_5737	0.82	-1.8
6,152,300	-		PP_5737	0.82	-2.4
6,152,300	-		PP_5737	0.82	+0.0
6,152,344	-		PP_5737	0.90	+0.3
6,152,380	+				+0.8
6,152,381	-				+0.7
6,152,381	-				+0.8
6,152,405	+				+1.2
6,152,405	+				-0.5
6,152,431	+				+0.4
6,152,431	+				+0.8
6,152,431	+				+0.2
6,152,431	+				+1.8
6,152,432	-				-0.3
6,152,432	-				-2.6
6,152,432	-				+1.1
6,152,432	-				-0.2
6,152,432	-				-0.9
6,152,435	+				+5.1
6,152,435	+				-0.6
6,152,435	+				-1.5
6,152,435	+				-4.1
6,152,436	-				-0.1
6,152,436	-				-1.8
6,152,436	-				+0.9
6,152,436	-				+0.5
6,152,436	-				-1.7
6,152,455	+				+0.8
6,152,511	+		PP_5738	0.19	-0.7
6,152,512	-		PP_5738	0.19	-1.6
6,152,515	+		PP_5738	0.19	+0.0
6,152,515	+		PP_5738	0.19	-0.8
6,152,515	+		PP_5738	0.19	+0.7
6,152,515	+		PP_5738	0.19	+1.1
6,152,515	+		PP_5738	0.19	-1.1
6,152,519	+		PP_5738	0.20	-0.3
6,152,519	+		PP_5738	0.20	+0.8
6,152,520	-		PP_5738	0.20	+1.7
6,152,557	-		PP_5738	0.28	+0.1
6,152,578	+		PP_5738	0.32	+1.3
6,152,579	-		PP_5738	0.33	+0.1
6,152,775	+		PP_5738	0.73	-0.5
6,152,775	+		PP_5738	0.73	-0.9
6,152,775	+		PP_5738	0.73	-0.1
6,152,776	-		PP_5738	0.73	-1.3
6,152,776	-		PP_5738	0.73	-1.3
6,152,789	+		PP_5738	0.75	+1.8
6,152,790	-		PP_5738	0.76	+0.8
6,152,910	-				-3.2
6,152,910	-				+2.8
6,152,910	-				-1.8
6,152,936	-				+2.0
6,152,936	-				-2.5