Strain Fitness in Pseudomonas putida KT2440 around PP_5718

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
5,633,874	+		PP_4947	0.86	-0.5
5,633,875	-		PP_4947	0.86	+1.4
5,634,014	+		PP_4947	0.90	+3.1
5,634,014	+		PP_4947	0.90	+0.4
5,634,014	+		PP_4947	0.90	+0.1
5,634,015	-		PP_4947	0.90	+0.6
5,634,015	-		PP_4947	0.90	+0.6
5,634,015	-		PP_4947	0.90	+1.4
5,634,264	+				+2.7
5,634,397	+				+0.8
5,634,504	+				-1.4
5,634,562	+				-0.4
5,634,563	-				-2.0
5,634,570	-				+0.7
5,634,626	+				-1.6
5,634,627	-				+0.2
5,634,628	+				-2.0
5,634,628	+				-2.9
5,634,628	+				-1.5
5,634,628	+				+0.8
5,634,628	+				-0.1
5,634,628	+				+1.2
5,634,628	+				-0.2
5,634,629	-				-0.4
5,634,629	-				-1.0
5,634,629	-				-0.0
5,634,629	-				+0.8
5,634,629	-				+0.0
5,634,629	-				-1.9
5,634,629	-				+1.0
5,634,629	-				-2.0
5,634,651	-				+0.4
5,634,728	+				+0.1
5,634,728	+				-0.4
5,634,729	-				-1.2
5,634,732	-				+3.6
5,634,863	+				+2.8
5,635,007	-		PP_5718	0.29	-0.0
5,635,007	-		PP_5718	0.29	+0.8
5,635,069	+		PP_5718	0.38	-0.4
5,635,070	-		PP_5718	0.38	+0.3
5,635,070	-		PP_5718	0.38	+1.5
5,635,072	+		PP_5718	0.39	+1.4
5,635,105	+		PP_5718	0.44	+3.1
5,635,106	-		PP_5718	0.44	+1.0
5,635,106	-		PP_5718	0.44	+0.3
5,635,113	-		PP_5718	0.45	-1.6
5,635,128	-		PP_5718	0.47	+0.6
5,635,156	+		PP_5718	0.51	+0.8
5,635,157	-		PP_5718	0.51	-2.5
5,635,157	-				-0.8
5,635,197	+		PP_5718	0.57	-2.2
5,635,220	+		PP_5718	0.60	-0.2
5,635,221	-		PP_5718	0.61	-4.0
5,635,221	-		PP_5718	0.61	+0.7
5,635,241	-		PP_5718	0.63	-3.8
5,635,271	+		PP_5718	0.68	+3.6
5,635,272	-		PP_5718	0.68	+1.8
5,635,284	+		PP_5718	0.70	-2.7
5,635,285	-		PP_5718	0.70	+0.8
5,635,308	+		PP_5718	0.73	+1.2
5,635,309	-		PP_5718	0.73	-0.2
5,635,470	+				-0.5
5,635,470	+				-0.2
5,635,470	+				-0.8
5,635,471	-				-0.3
5,635,471	-				-0.6
5,635,472	+				+2.1
5,635,473	-				+0.6
5,635,473	-				+2.6
5,635,473	-				+1.2
5,635,473	-				-0.8
5,635,473	-				+3.4
5,635,491	+				-2.6
5,635,492	-				+1.0
5,635,555	+				+1.0
5,635,568	+				-0.8
5,635,568	+				-1.5
5,635,568	+				-2.8
5,635,569	-				+1.1
5,635,572	-				-0.7
5,635,572	-				+0.2
5,635,572	-				-1.2
5,635,599	+				-0.6
5,635,599	+				+1.0
5,635,600	-				-0.8
5,635,679	-				-0.8
5,635,787	-				-0.8
5,635,831	+		PP_4948	0.11	-0.4
5,635,866	+		PP_4948	0.13	-0.8
5,636,104	+				+0.8
5,636,159	+		PP_4948	0.29	-0.8
5,636,159	+		PP_4948	0.29	+1.8
5,636,159	+		PP_4948	0.29	+2.8
5,636,160	-				+2.4
5,636,160	-		PP_4948	0.29	+1.8
5,636,160	-		PP_4948	0.29	+0.1
5,636,160	-		PP_4948	0.29	-0.3
5,636,332	+		PP_4948	0.39	+1.6
5,636,333	-		PP_4948	0.39	-1.1
5,636,339	+		PP_4948	0.39	+0.1
5,636,339	+		PP_4948	0.39	-1.1
5,636,339	+		PP_4948	0.39	+2.4
5,636,340	-		PP_4948	0.39	-1.1