Strain Fitness in Pseudomonas putida KT2440 around PP_5613

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
4,190,826	+				-0.6
4,190,826	+				-3.0
4,190,827	-				+0.3
4,190,827	-				-1.4
4,190,942	+				-2.7
4,191,164	+				-0.0
4,191,218	+				-0.9
4,191,219	-				+1.2
4,191,252	+				-1.0
4,191,253	-				-0.1
4,191,253	-				-0.1
4,191,365	+				-2.8
4,191,366	-				+1.1
4,191,366	-				+0.1
4,191,525	+				+0.1
4,191,526	-				+1.6
4,191,605	+				-0.3
4,191,605	+				+1.6
4,191,606	-				-4.6
4,191,673	+				-2.7
4,191,674	-				-0.7
4,191,710	+				-1.7
4,191,723	+				-2.3
4,191,724	-				+0.6
4,191,752	+				+0.0
4,191,752	+				+1.3
4,191,760	-				-0.6
4,191,779	+				+1.1
4,191,779	+				-2.6
4,191,779	+				-0.5
4,191,780	-				+0.2
4,191,780	-				+0.3
4,191,780	-				-0.1
4,191,780	-				-4.1
4,191,907	+		PP_5613	0.14	-0.5
4,191,907	+		PP_5613	0.14	+0.2
4,191,907	+		PP_5613	0.14	+3.5
4,191,908	-		PP_5613	0.15	-0.1
4,191,908	-		PP_5613	0.15	-1.6
4,191,908	-		PP_5613	0.15	-0.3
4,191,908	-		PP_5613	0.15	+2.9
4,191,908	-		PP_5613	0.15	-1.6
4,191,908	-		PP_5613	0.15	-1.9
4,191,909	+		PP_5613	0.15	-2.8
4,191,909	+		PP_5613	0.15	-1.1
4,191,910	-		PP_5613	0.15	-0.9
4,191,911	+		PP_5613	0.15	-3.4
4,191,912	-		PP_5613	0.15	-1.1
4,191,922	-		PP_5613	0.17	+0.6
4,191,922	-		PP_5613	0.17	-0.9
4,191,996	+		PP_5613	0.30	+1.4
4,191,997	-		PP_5613	0.30	+0.8
4,191,997	-		PP_5613	0.30	-1.5
4,191,997	-		PP_5613	0.30	-1.3
4,192,044	+		PP_5613	0.38	-0.6
4,192,044	+		PP_5613	0.38	-1.0
4,192,067	+		PP_5613	0.42	-0.5
4,192,067	+		PP_5613	0.42	-0.3
4,192,101	+		PP_5613	0.48	-1.4
4,192,115	+		PP_5613	0.51	+0.9
4,192,211	+		PP_5613	0.68	-0.2
4,192,212	-		PP_5613	0.68	+0.4
4,192,322	-		PP_5613	0.87	+1.1
4,192,344	+				+0.4
4,192,408	+				+0.9
4,192,425	+				-0.6
4,192,431	+				-0.6
4,192,451	+				-0.8
4,192,451	+				-0.1
4,192,451	+				-0.3
4,192,452	-				-1.1
4,192,514	+				+0.0
4,192,515	-				+1.6
4,192,544	+				-1.0
4,192,545	-				-1.1
4,192,584	-				+1.3
4,192,671	+				+0.7
4,192,704	+				-0.9
4,192,832	+				+1.1
4,192,832	+				+1.5
4,192,832	+				-0.4
4,192,833	-				+0.6
4,192,833	-				+0.9
4,192,833	-				+1.1
4,192,833	-				+1.3
4,192,856	+				-2.2
4,192,857	-				-0.9
4,192,875	+				+0.2
4,192,875	+				-0.9
4,192,876	-				+3.3
4,192,882	-				+1.2
4,192,882	-				+0.7
4,192,907	-				-2.3
4,192,925	+				-0.4
4,192,926	-				-0.2
4,192,995	+				-0.7
4,192,995	+				-0.1
4,192,995	+				-0.7
4,192,995	+				+1.6
4,193,010	+				-3.0
4,193,010	+				-1.5
4,193,112	+		PP_5614	0.15	-1.3
4,193,112	+		PP_5614	0.15	-0.8
4,193,113	-		PP_5614	0.15	-1.2
4,193,152	+		PP_5614	0.24	+0.7
4,193,153	-		PP_5614	0.24	-0.4
4,193,159	+		PP_5614	0.25	+0.2
4,193,223	+		PP_5614	0.39	-1.2
4,193,224	-		PP_5614	0.40	+2.5
4,193,224	-		PP_5614	0.40	-0.4
4,193,224	-		PP_5614	0.40	+2.2
4,193,274	-		PP_5614	0.51	-3.1
4,193,336	+		PP_5614	0.64	-2.6
4,193,336	+		PP_5614	0.64	-0.0
4,193,336	+		PP_5614	0.64	-0.8
4,193,336	+		PP_5614	0.64	+0.5
4,193,336	+		PP_5614	0.64	+1.2
4,193,336	+		PP_5614	0.64	+0.1
4,193,336	+		PP_5614	0.64	+0.4
4,193,336	+		PP_5614	0.64	-0.7
4,193,336	+		PP_5614	0.64	+0.1
4,193,336	+		PP_5614	0.64	+3.7
4,193,336	+		PP_5614	0.64	-0.4
4,193,336	+		PP_5614	0.64	+1.8
4,193,337	-		PP_5614	0.64	-0.7
4,193,337	-		PP_5614	0.64	+0.2
4,193,337	-		PP_5614	0.64	-0.8
4,193,337	-		PP_5614	0.64	-1.5
4,193,337	-		PP_5614	0.64	+0.5
4,193,337	-		PP_5614	0.64	+0.4
4,193,337	-		PP_5614	0.64	-3.0
4,193,337	-		PP_5614	0.64	+4.0
4,193,337	-		PP_5614	0.64	-1.2
4,193,337	-		PP_5614	0.64	+0.4
4,193,337	-		PP_5614	0.64	-1.1
4,193,337	-		PP_5614	0.64	-2.1
4,193,343	+		PP_5614	0.66	+0.9
4,193,344	-		PP_5614	0.66	-0.5
4,193,344	-		PP_5614	0.66	-0.1
4,193,344	-				+0.9