Strain Fitness in Pseudomonas putida KT2440 around PP_5554

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
3,420,352	-		PP_3034	0.34	-0.4
3,420,357	-				-0.7
3,420,357	-		PP_3034	0.36	-2.3
3,420,398	-		PP_3034	0.51	-2.2
3,420,408	-		PP_3034	0.55	-2.7
3,420,525	-				-3.7
3,420,565	-		PP_3035	0.74	-1.3
3,420,565	-		PP_3035	0.74	-1.3
3,420,727	-				-0.4
3,420,730	-				-1.1
3,420,730	-				-2.1
3,420,758	-		PP_5554	0.21	+3.9
3,420,791	-		PP_5554	0.39	-1.5
3,420,791	-		PP_5554	0.39	+2.5
3,420,800	-		PP_5554	0.44	+0.4
3,420,800	-		PP_5554	0.44	-3.3
3,420,800	-		PP_5554	0.44	+0.9
3,420,800	-		PP_5554	0.44	-0.9
3,420,800	-		PP_5554	0.44	+0.1
3,420,800	-		PP_5554	0.44	-0.5
3,420,800	-		PP_5554	0.44	-1.5
3,420,800	-		PP_5554	0.44	+0.7
3,420,881	-		PP_5554	0.89	+0.9
3,420,885	-				+0.5
3,420,902	-				+0.5
3,420,902	-				-0.1
3,420,902	-				+0.4
3,420,902	-				-0.8
3,420,902	-				-0.4
3,420,933	+				+2.6
3,420,977	-				+0.4
3,421,054	+		PP_3036	0.45	-0.4
3,421,055	-		PP_3036	0.46	+2.4
3,421,055	-		PP_3036	0.46	+0.2
3,421,055	-		PP_3036	0.46	-2.7
3,421,055	-		PP_3036	0.46	-0.1
3,421,062	+		PP_3036	0.49	-1.7
3,421,063	-		PP_3036	0.50	-0.5
3,421,194	-		PP_5555	0.13	-0.3
3,421,211	+		PP_5555	0.17	+1.7
3,421,211	+		PP_5555	0.17	+0.1
3,421,300	+		PP_5555	0.34	-1.8
3,421,300	+		PP_5555	0.34	-0.9
3,421,301	-		PP_5555	0.34	+0.0
3,421,301	-		PP_5555	0.34	-0.0
3,421,301	-		PP_5555	0.34	-3.1
3,421,415	+		PP_5555	0.56	-1.1
3,421,415	+		PP_5555	0.56	-0.4
3,421,415	+		PP_5555	0.56	+0.2
3,421,415	+		PP_5555	0.56	+1.4
3,421,416	-		PP_5555	0.56	-1.5
3,421,416	-		PP_5555	0.56	+2.9
3,421,417	+		PP_5555	0.56	-0.3
3,421,417	+		PP_5555	0.56	-1.5
3,421,417	+		PP_5555	0.56	-1.9
3,421,417	+		PP_5555	0.56	+3.4
3,421,418	-		PP_5555	0.57	+0.1
3,421,418	-		PP_5555	0.57	-1.6
3,421,418	-		PP_5555	0.57	-0.7
3,421,427	-		PP_5555	0.58	+0.1
3,421,502	-		PP_5555	0.73	-1.7
3,421,589	+		PP_5555	0.90	+1.3
3,421,589	+		PP_5555	0.90	+0.6
3,421,590	-		PP_5555	0.90	+0.4
3,421,604	+				-0.7
3,421,604	+				-0.9
3,421,605	-				-3.4
3,421,644	-				+2.4
3,421,687	+		PP_3037	0.24	+0.7
3,421,687	+		PP_3037	0.24	+0.3
3,421,688	-		PP_3037	0.24	+0.7
3,421,843	-				+3.4
3,421,851	+				-2.5
3,421,851	+				-0.5
3,421,852	-				+4.7
3,421,852	-				-0.6
3,421,877	-				-0.7