Strain Fitness in Pseudomonas putida KT2440 around PP_5470

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
1,609,562	+		PP_1411	0.53	-0.5
1,609,562	+		PP_1411	0.53	+0.9
1,609,563	-		PP_1411	0.53	+0.2
1,609,563	-		PP_1411	0.53	+0.2
1,609,563	-		PP_1411	0.53	+0.9
1,609,566	+		PP_1411	0.53	-0.7
1,609,566	+		PP_1411	0.53	-4.1
1,609,566	+		PP_1411	0.53	-0.1
1,609,567	-		PP_1411	0.53	+2.0
1,609,567	-		PP_1411	0.53	-2.5
1,609,567	-		PP_1411	0.53	-0.6
1,609,669	+		PP_1411	0.60	-1.1
1,609,698	+		PP_1411	0.62	+1.4
1,609,698	+		PP_1411	0.62	-0.4
1,609,698	+		PP_1411	0.62	-2.7
1,609,699	-		PP_1411	0.62	-0.1
1,609,699	-		PP_1411	0.62	+1.8
1,609,699	-		PP_1411	0.62	-1.4
1,609,742	-		PP_1411	0.65	-1.1
1,609,756	+		PP_1411	0.66	+3.2
1,609,756	+		PP_1411	0.66	-2.4
1,609,757	-		PP_1411	0.66	+2.2
1,609,757	-		PP_1411	0.66	+0.0
1,609,757	-		PP_1411	0.66	+0.2
1,609,817	-		PP_1411	0.70	+0.7
1,609,903	+		PP_1411	0.76	+0.1
1,609,903	+		PP_1411	0.76	-1.0
1,609,904	-		PP_1411	0.76	-0.6
1,609,904	-		PP_1411	0.76	-1.1
1,609,904	-		PP_1411	0.76	+1.3
1,609,904	-		PP_1411	0.76	+2.9
1,609,906	+		PP_1411	0.76	+0.4
1,609,907	-		PP_1411	0.76	-1.0
1,609,907	-		PP_1411	0.76	-2.0
1,609,907	-		PP_1411	0.76	+0.9
1,609,907	-		PP_1411	0.76	-1.5
1,609,975	+		PP_1411	0.80	-1.0
1,610,095	+		PP_1411	0.89	-0.8
1,610,167	+				+0.9
1,610,167	+				+0.5
1,610,168	-				-1.1
1,610,168	-				+2.2
1,610,168	-				+1.0
1,610,206	-				+1.0
1,610,256	+				+0.9
1,610,256	+				-1.7
1,610,256	+				+0.1
1,610,257	-				+0.3
1,610,257	-				+1.2
1,610,299	+				+0.5
1,610,299	+				+0.3
1,610,396	+				-0.7
1,610,397	-				-1.1
1,610,397	-				+1.2
1,610,484	-				+0.5
1,610,537	+		PP_5470	0.13	-0.1
1,610,537	+		PP_5470	0.13	+0.0
1,610,540	+		PP_5470	0.14	-1.5
1,610,540	+		PP_5470	0.14	+1.1
1,610,540	+		PP_5470	0.14	+1.8
1,610,541	-		PP_5470	0.14	-1.8
1,610,541	-				+3.4
1,610,541	-		PP_5470	0.14	+1.9
1,610,555	+		PP_5470	0.17	+0.4
1,610,559	-		PP_5470	0.18	+1.4
1,610,570	+		PP_5470	0.21	+1.6
1,610,571	-		PP_5470	0.21	+1.0
1,610,571	-		PP_5470	0.21	-1.1
1,610,571	-		PP_5470	0.21	-0.1
1,610,573	+		PP_5470	0.21	+0.9
1,610,574	-		PP_5470	0.22	+2.6
1,610,574	-		PP_5470	0.22	-1.7
1,610,588	+		PP_5470	0.25	+2.1
1,610,588	+		PP_5470	0.25	+1.9
1,610,589	-		PP_5470	0.25	-0.5
1,610,589	-		PP_5470	0.25	-1.7
1,610,589	-		PP_5470	0.25	-0.1
1,610,589	-		PP_5470	0.25	+2.1
1,610,589	-		PP_5470	0.25	+2.7
1,610,604	-		PP_5470	0.28	-0.6
1,610,622	-		PP_5470	0.32	-1.5
1,610,624	+		PP_5470	0.33	+0.1
1,610,624	+		PP_5470	0.33	-2.1
1,610,624	+		PP_5470	0.33	-0.5
1,610,624	+		PP_5470	0.33	+0.9
1,610,624	+		PP_5470	0.33	+0.9
1,610,624	+		PP_5470	0.33	+2.0
1,610,624	+		PP_5470	0.33	+0.5
1,610,624	+		PP_5470	0.33	-0.9
1,610,624	+		PP_5470	0.33	-1.7
1,610,624	+		PP_5470	0.33	-0.1
1,610,624	+		PP_5470	0.33	+0.9
1,610,624	+		PP_5470	0.33	+0.9
1,610,624	+		PP_5470	0.33	+1.4
1,610,625	-		PP_5470	0.33	+0.9
1,610,625	-		PP_5470	0.33	+0.3
1,610,625	-		PP_5470	0.33	-0.7
1,610,625	-		PP_5470	0.33	-0.3
1,610,625	-		PP_5470	0.33	+0.8
1,610,628	+		PP_5470	0.34	+0.9
1,610,628	+		PP_5470	0.34	+0.0
1,610,628	+		PP_5470	0.34	+0.5
1,610,629	-		PP_5470	0.34	+1.6
1,610,629	-		PP_5470	0.34	+0.5
1,610,629	-		PP_5470	0.34	+2.9
1,610,629	-		PP_5470	0.34	+1.9
1,610,629	-		PP_5470	0.34	-0.5
1,610,646	-		PP_5470	0.38	+0.4
1,610,646	-		PP_5470	0.38	+0.3
1,610,646	-		PP_5470	0.38	-1.5
1,610,646	-		PP_5470	0.38	+3.7
1,610,648	+		PP_5470	0.38	-1.1
1,610,648	+		PP_5470	0.38	+1.3
1,610,649	-		PP_5470	0.38	+0.6
1,610,649	-		PP_5470	0.38	-3.4
1,610,649	-		PP_5470	0.38	+1.2
1,610,651	+		PP_5470	0.39	-0.7
1,610,652	-		PP_5470	0.39	-1.3
1,610,652	-		PP_5470	0.39	-1.6
1,610,652	-		PP_5470	0.39	-0.5
1,610,670	-		PP_5470	0.43	-0.7
1,610,672	+		PP_5470	0.43	+1.7
1,610,756	+		PP_5470	0.62	-0.9
1,610,756	+		PP_5470	0.62	-0.2
1,610,756	+		PP_5470	0.62	-1.0
1,610,756	+		PP_5470	0.62	+1.9
1,610,756	+		PP_5470	0.62	+0.9
1,610,757	-		PP_5470	0.62	+2.4
1,610,757	-				-0.1
1,610,808	-		PP_5470	0.74	+0.9
1,611,155	+		PP_1412	0.17	-0.1
1,611,188	+		PP_1412	0.20	-0.5
1,611,340	+		PP_1412	0.33	+0.5
1,611,436	+		PP_1412	0.42	+0.1
1,611,437	-		PP_1412	0.42	-1.5
1,611,437	-		PP_1412	0.42	+2.2
1,611,437	-		PP_1412	0.42	+1.5
1,611,437	-		PP_1412	0.42	+2.1
1,611,632	+		PP_1412	0.60	+0.0
1,611,688	+		PP_1412	0.65	+0.4
1,611,688	+		PP_1412	0.65	+0.5
1,611,688	+		PP_1412	0.65	+1.5
1,611,688	+		PP_1412	0.65	+1.8
1,611,688	+		PP_1412	0.65	+0.6
1,611,688	+		PP_1412	0.65	+0.9
1,611,689	-		PP_1412	0.65	-2.8
1,611,689	-		PP_1412	0.65	-2.1
1,611,689	-		PP_1412	0.65	-2.0