Strain Fitness in Pseudomonas putida KT2440 around PP_5467

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
1,422,331	+		PP_1246	0.49	+0.5
1,422,396	-		PP_1246	0.52	+0.6
1,422,420	-		PP_1246	0.54	-1.3
1,422,420	-		PP_1246	0.54	-1.8
1,422,453	-		PP_1246	0.56	-1.7
1,422,455	+		PP_1246	0.56	+1.1
1,422,503	+		PP_1246	0.58	+1.9
1,422,504	-		PP_1246	0.58	+0.6
1,422,504	-		PP_1246	0.58	-0.3
1,422,711	+		PP_1246	0.69	+0.9
1,422,924	+		PP_1246	0.81	+1.4
1,422,924	+				+1.4
1,422,925	-		PP_1246	0.81	-0.9
1,422,968	+		PP_1246	0.83	-3.8
1,422,969	-		PP_1246	0.83	+0.9
1,422,969	-		PP_1246	0.83	-0.3
1,422,969	-		PP_1246	0.83	-4.1
1,422,969	-		PP_1246	0.83	+0.7
1,422,969	-		PP_1246	0.83	-0.5
1,423,016	+		PP_1246	0.86	+0.7
1,423,032	-		PP_1246	0.87	+0.0
1,423,062	-		PP_1246	0.88	-1.3
1,423,062	-		PP_1246	0.88	+0.3
1,423,065	-		PP_1246	0.88	-1.1
1,423,093	+		PP_1246	0.90	+0.1
1,423,093	+		PP_1246	0.90	+0.8
1,423,098	-				-1.3
1,423,238	+				-0.9
1,423,238	+				-0.9
1,423,238	+				-0.2
1,423,238	+				+1.9
1,423,239	-				+0.7
1,423,239	-				-1.0
1,423,365	+				-1.5
1,423,407	+				+0.9
1,423,410	+				-3.0
1,423,411	-		PP_5467	0.10	-0.5
1,423,411	-		PP_5467	0.10	+2.4
1,423,431	+		PP_5467	0.12	+2.9
1,423,432	-		PP_5467	0.12	+1.0
1,423,432	-		PP_5467	0.12	+1.5
1,423,470	+		PP_5467	0.15	+0.4
1,423,586	-		PP_5467	0.24	+2.4
1,423,629	+		PP_5467	0.28	+0.9
1,423,665	+		PP_5467	0.31	-0.7
1,423,665	+		PP_5467	0.31	+0.4
1,423,727	+		PP_5467	0.36	+1.1
1,423,728	-		PP_5467	0.36	+0.1
1,423,761	+		PP_5467	0.39	-0.4
1,423,761	+		PP_5467	0.39	+1.7
1,423,761	+		PP_5467	0.39	-3.0
1,423,762	-		PP_5467	0.39	+0.9
1,423,762	-		PP_5467	0.39	+1.2
1,424,140	-		PP_5467	0.70	-1.1
1,424,148	+		PP_5467	0.71	-1.0
1,424,215	-		PP_5467	0.77	+0.6
1,424,226	+		PP_5467	0.77	+2.4
1,424,226	+		PP_5467	0.77	+1.2
1,424,227	-				+2.4
1,424,424	+				-0.5
1,424,424	+				+0.5
1,424,424	+				-0.4
1,424,425	-				+0.4
1,424,425	-				+0.3
1,424,425	-				+0.6
1,424,425	-				+0.5
1,424,425	-				+0.4
1,424,478	+				-0.0
1,424,479	-				-0.0
1,424,479	-				+0.9
1,424,556	+				-1.4
1,424,664	+				+1.7
1,424,664	+				-1.3
1,424,665	-				+1.9
1,424,665	-				+0.2
1,424,665	-				-2.3
1,424,735	+		PP_1248	0.18	-0.6
1,424,736	-		PP_1248	0.18	-1.1
1,424,736	-		PP_1248	0.18	+1.5
1,424,834	+		PP_1248	0.31	-0.5
1,424,834	+		PP_1248	0.31	-0.1
1,424,834	+		PP_1248	0.31	+1.0
1,424,835	-		PP_1248	0.31	+0.1
1,424,961	-		PP_1248	0.47	+1.9
1,424,961	-		PP_1248	0.47	+0.4
1,424,970	-		PP_1248	0.48	+0.4
1,424,970	-		PP_1248	0.48	+0.9
1,424,994	+		PP_1248	0.51	-2.2
1,424,995	-		PP_1248	0.52	+0.1
1,424,995	-		PP_1248	0.52	-2.1
1,425,011	+		PP_1248	0.54	-1.1
1,425,011	+		PP_1248	0.54	-1.3
1,425,011	+		PP_1248	0.54	-0.1
1,425,258	+		PP_1248	0.86	+0.9
1,425,258	+		PP_1248	0.86	-2.0
1,425,258	+		PP_1248	0.86	-0.4
1,425,258	+		PP_1248	0.86	+0.9
1,425,405	+				+1.6
1,425,488	+		PP_1249	0.42	+0.9
1,425,489	-		PP_1249	0.43	+0.9
1,425,489	-		PP_1249	0.43	+4.6