Experiment: pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0284 and PP_5439 are separated by 131 nucleotides PP_5439 and PP_5440 are separated by 239 nucleotides PP_5440 and PP_t72 are separated by 188 nucleotides PP_t72 and PP_0285 are separated by 90 nucleotides PP_0285 and PP_0286 overlap by 4 nucleotides
PP_0284: PP_0284 - gamma-aminobutyrate permease, at 341,484 to 342,869
_0284
PP_5439: PP_5439 - conserved protein of unknown function, at 343,001 to 343,444
_5439
PP_5440: PP_5440 - conserved protein of unknown function, at 343,684 to 343,911
_5440
PP_t72: PP_t72 - tRNA-Phe, at 344,100 to 344,175
_t72
PP_0285: PP_0285 - Fe(2+)-trafficking protein, at 344,266 to 344,538
_0285
PP_0286: PP_0286 - adenine glycosylase, at 344,535 to 345,602
_0286
Position (kb) 343
344 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 342.794 kb on + strand at 342.795 kb on - strand at 342.989 kb on + strand at 342.989 kb on + strand at 342.990 kb on - strand at 342.990 kb on - strand at 342.991 kb on + strand at 342.991 kb on + strand at 342.991 kb on + strand at 342.991 kb on + strand at 342.992 kb on - strand at 342.992 kb on - strand at 342.992 kb on - strand at 342.992 kb on - strand at 342.992 kb on - strand at 343.057 kb on + strand, within PP_5439 at 343.059 kb on + strand, within PP_5439 at 343.059 kb on + strand, within PP_5439 at 343.060 kb on - strand, within PP_5439 at 343.060 kb on - strand, within PP_5439 at 343.060 kb on - strand, within PP_5439 at 343.158 kb on + strand, within PP_5439 at 343.158 kb on + strand, within PP_5439 at 343.159 kb on - strand, within PP_5439 at 343.314 kb on + strand, within PP_5439 at 343.314 kb on + strand, within PP_5439 at 343.315 kb on - strand, within PP_5439 at 343.373 kb on + strand, within PP_5439 at 343.479 kb on - strand at 343.548 kb on + strand at 343.548 kb on + strand at 343.548 kb on + strand at 343.548 kb on + strand at 343.548 kb on + strand at 343.548 kb on + strand at 343.549 kb on - strand at 343.549 kb on - strand at 343.549 kb on - strand at 343.553 kb on - strand at 343.553 kb on - strand at 343.561 kb on + strand at 343.583 kb on + strand at 343.584 kb on - strand at 343.584 kb on - strand at 343.584 kb on - strand at 343.584 kb on - strand at 343.669 kb on + strand at 343.669 kb on + strand at 343.697 kb on - strand at 343.717 kb on + strand, within PP_5440 at 343.717 kb on + strand, within PP_5440 at 343.739 kb on - strand, within PP_5440 at 343.739 kb on - strand, within PP_5440 at 343.739 kb on - strand, within PP_5440 at 343.739 kb on - strand, within PP_5440 at 343.741 kb on + strand, within PP_5440 at 343.742 kb on - strand, within PP_5440 at 343.779 kb on + strand, within PP_5440 at 343.779 kb on + strand, within PP_5440 at 343.780 kb on - strand, within PP_5440 at 343.852 kb on + strand, within PP_5440 at 343.852 kb on + strand, within PP_5440 at 343.853 kb on - strand, within PP_5440 at 343.853 kb on - strand, within PP_5440 at 343.853 kb on - strand, within PP_5440 at 343.909 kb on + strand at 343.909 kb on + strand at 343.910 kb on - strand at 343.961 kb on + strand at 343.962 kb on - strand at 344.286 kb on - strand at 344.511 kb on - strand at 344.633 kb on - strand at 344.633 kb on - strand at 344.633 kb on - strand at 344.633 kb on - strand at 344.861 kb on - strand, within PP_0286
Per-strain Table
Position Strand Gene LocusTag Fraction pH 6 remove 342,794 + -1.2 342,795 - +0.8 342,989 + -0.7 342,989 + -0.7 342,990 - -0.2 342,990 - +0.6 342,991 + -0.6 342,991 + +0.8 342,991 + +1.3 342,991 + -0.9 342,992 - -0.6 342,992 - +0.8 342,992 - +0.8 342,992 - -2.9 342,992 - +0.8 343,057 + PP_5439 0.13 -1.9 343,059 + PP_5439 0.13 -0.2 343,059 + PP_5439 0.13 -2.2 343,060 - PP_5439 0.13 +0.8 343,060 - PP_5439 0.13 -2.2 343,060 - PP_5439 0.13 +3.4 343,158 + PP_5439 0.35 +0.3 343,158 + PP_5439 0.35 -0.2 343,159 - PP_5439 0.36 +2.7 343,314 + PP_5439 0.70 +0.8 343,314 + PP_5439 0.70 +1.8 343,315 - PP_5439 0.71 -1.0 343,373 + PP_5439 0.84 -0.0 343,479 - +0.7 343,548 + -2.7 343,548 + -2.5 343,548 + +2.8 343,548 + +3.5 343,548 + -0.9 343,548 + +0.0 343,549 - +0.8 343,549 - -1.0 343,549 - +2.8 343,553 - +0.6 343,553 - -0.7 343,561 + +1.1 343,583 + -0.4 343,584 - -0.9 343,584 - +0.8 343,584 - +1.6 343,584 - +0.8 343,669 + -0.7 343,669 + -2.0 343,697 - +2.4 343,717 + PP_5440 0.14 +0.8 343,717 + PP_5440 0.14 -4.0 343,739 - PP_5440 0.24 -0.4 343,739 - PP_5440 0.24 -2.2 343,739 - PP_5440 0.24 -1.5 343,739 - PP_5440 0.24 -0.4 343,741 + PP_5440 0.25 -1.2 343,742 - PP_5440 0.25 +1.0 343,779 + PP_5440 0.42 -0.2 343,779 + PP_5440 0.42 -1.4 343,780 - PP_5440 0.42 -0.1 343,852 + PP_5440 0.74 -3.0 343,852 + PP_5440 0.74 -2.0 343,853 - PP_5440 0.74 -1.7 343,853 - PP_5440 0.74 -1.8 343,853 - PP_5440 0.74 -0.3 343,909 + -0.4 343,909 + +0.0 343,910 - -1.0 343,961 + +2.4 343,962 - -1.6 344,286 - -1.3 344,511 - +3.6 344,633 - +1.5 344,633 - -1.0 344,633 - +1.8 344,633 - -0.2 344,861 - PP_0286 0.31 -0.3
Or see this region's nucleotide sequence