Strain Fitness in Pseudomonas putida KT2440 around PP_5407

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
6,166,039	+		PP_5406	0.79	+2.0
6,166,040	-		PP_5406	0.79	+3.8
6,166,040	-		PP_5406	0.79	+0.0
6,166,047	+		PP_5406	0.80	+0.4
6,166,047	+		PP_5406	0.80	-0.5
6,166,048	-		PP_5406	0.80	-0.8
6,166,048	-		PP_5406	0.80	-0.4
6,166,048	-		PP_5406	0.80	-0.5
6,166,110	-		PP_5406	0.86	+0.7
6,166,110	-		PP_5406	0.86	+0.0
6,166,110	-		PP_5406	0.86	+1.8
6,166,122	+		PP_5406	0.88	+0.6
6,166,122	+		PP_5406	0.88	-1.0
6,166,122	+		PP_5406	0.88	-0.7
6,166,123	-		PP_5406	0.88	-1.4
6,166,136	+		PP_5406	0.89	-0.4
6,166,136	+		PP_5406	0.89	-2.0
6,166,136	+		PP_5406	0.89	-0.2
6,166,136	+		PP_5406	0.89	+2.0
6,166,137	-		PP_5406	0.89	-0.4
6,166,137	-		PP_5406	0.89	+1.9
6,166,137	-		PP_5406	0.89	-1.1
6,166,137	-		PP_5406	0.89	-0.7
6,166,170	+				+0.3
6,166,170	+				+0.0
6,166,170	+				+1.4
6,166,170	+				+3.6
6,166,170	+				-0.5
6,166,170	+				+3.6
6,166,170	+				+0.7
6,166,170	+				+0.3
6,166,171	-				-0.8
6,166,171	-				-1.5
6,166,171	-				-3.5
6,166,171	-				+1.9
6,166,171	-				+1.3
6,166,171	-				-1.3
6,166,171	-				-1.4
6,166,174	+				-1.4
6,166,174	+				+0.6
6,166,174	+				-3.3
6,166,174	+				-0.5
6,166,174	+				+1.8
6,166,174	+				+0.1
6,166,174	+				-1.0
6,166,174	+				+2.8
6,166,175	-				-2.7
6,166,175	-				-1.3
6,166,175	-				-0.5
6,166,175	-				+1.3
6,166,175	-				+0.8
6,166,175	-				+0.9
6,166,175	-				-2.0
6,166,175	-				+0.3
6,166,175	-				-2.5
6,166,175	-				-1.9
6,166,175	-				-0.4
6,166,175	-				+1.2
6,166,175	-				+1.3
6,166,175	-				+1.8
6,166,175	-				+0.0
6,166,175	-				+1.5
6,166,262	-				-0.2
6,166,333	+				+0.8
6,166,334	-				+3.8
6,166,490	+				-0.8
6,166,491	-				-1.2
6,166,515	-				+1.2
6,166,518	+				-1.2
6,166,518	+				+0.4
6,166,518	+				+0.8
6,166,519	-				-1.2
6,166,543	+				-3.4
6,166,544	-				+0.5
6,166,544	-				+0.1
6,166,549	+				+1.1
6,166,550	-				+0.5
6,166,550	-				+3.4
6,166,550	-				-0.5
6,166,550	-				+0.8
6,166,555	-				-1.4
6,166,645	+				-2.3
6,166,707	+				-2.7
6,166,707	+				+0.4
6,166,707	+				+0.6
6,166,718	+				-3.7
6,166,718	+				-0.4
6,166,719	-				+1.6
6,166,719	-				-1.7
6,166,719	-				-0.2
6,166,728	+				+1.4
6,166,729	-				-0.4
6,166,745	+				-0.2
6,166,746	-				+0.6
6,166,746	-				+0.3
6,166,839	+				-2.9
6,166,875	+				+3.1
6,166,902	-				+0.0
6,166,916	-				+0.2
6,166,943	+				-2.7
6,166,985	+				-0.7
6,167,001	+				-0.5
6,167,026	-				-0.4
6,167,031	+				+0.0
6,167,244	+		PP_5407	0.20	-0.5
6,167,245	-		PP_5407	0.20	+1.3
6,167,251	+		PP_5407	0.21	-0.8
6,167,251	+		PP_5407	0.21	+0.8
6,167,252	-		PP_5407	0.21	-0.2
6,167,350	+		PP_5407	0.27	-1.2
6,167,360	+		PP_5407	0.27	-1.7
6,167,382	+		PP_5407	0.29	+2.4
6,167,505	-		PP_5407	0.37	-0.8
6,167,537	+		PP_5407	0.39	-0.4
6,167,611	+		PP_5407	0.43	-1.5
6,167,786	-		PP_5407	0.54	-0.9
6,167,912	+		PP_5407	0.62	-0.7
6,168,058	-		PP_5407	0.71	-2.0
6,168,068	+		PP_5407	0.72	+0.8
6,168,069	-		PP_5407	0.72	+0.4
6,168,073	-		PP_5407	0.72	-0.7
6,168,073	-		PP_5407	0.72	-3.7
6,168,103	-		PP_5407	0.74	-0.7
6,168,165	+		PP_5407	0.78	-1.7
6,168,241	+		PP_5407	0.83	-1.2
6,168,572	-				+0.3
6,168,813	-				-0.8
6,168,813	-				+3.4
6,168,813	-				-3.8
6,168,839	+				+0.1
6,168,839	+				-0.8
6,168,840	-				+0.2
6,168,875	-				+0.4
6,168,875	-				-2.8
6,168,875	-				-1.1
6,168,882	+				+1.4
6,168,882	+				-0.0
6,168,883	-				+0.3
6,168,901	+				-0.4
6,168,902	-				+3.4
6,168,959	+				+0.8
6,168,959	+				+3.4
6,168,959	+				+0.8
6,168,959	+				-0.6
6,168,959	+				-1.4
6,169,065	+				-0.2
6,169,065	+				+0.0
6,169,066	-				-1.0
6,169,066	-				-0.0
6,169,071	+				-0.2
6,169,083	+				-1.1
6,169,109	+				-0.8
6,169,109	+				+0.4
6,169,110	-				+0.7
6,169,110	-				-0.1
6,169,114	+				-1.0
6,169,114	+				-3.9
6,169,145	+				+1.1
6,169,146	-				-0.4
6,169,146	-				+0.8
6,169,236	+		PP_5408	0.10	-1.3
6,169,294	+		PP_5408	0.15	+2.2
6,169,295	-		PP_5408	0.15	-1.5
6,169,360	-		PP_5408	0.21	+1.9
6,169,465	-		PP_5408	0.30	-0.2
6,169,483	-		PP_5408	0.31	+1.8
6,169,508	+		PP_5408	0.33	+0.2