Strain Fitness in Pseudomonas putida KT2440 around PP_5384

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
6,134,698	+		PP_5382	0.73	+0.8
6,134,699	-		PP_5382	0.74	+0.8
6,134,707	+		PP_5382	0.76	+1.8
6,134,708	-		PP_5382	0.76	-0.1
6,134,708	-		PP_5382	0.76	+0.8
6,134,829	-				-0.8
6,134,874	+				+2.4
6,134,875	-				-1.1
6,134,902	+				+1.7
6,134,911	+				+1.0
6,134,911	+				-1.6
6,134,911	+				-1.4
6,134,911	+				+1.0
6,134,911	+				+1.6
6,134,912	-				+2.6
6,134,912	-				+0.8
6,134,912	-				+0.6
6,134,912	-				+0.8
6,134,918	-				-1.5
6,134,934	-				+1.1
6,134,964	+				-0.6
6,134,964	+				-0.2
6,134,964	+				-0.8
6,134,964	+				+0.3
6,134,965	-				+0.8
6,134,965	-				-1.2
6,134,965	-				+0.4
6,134,965	-				+2.8
6,134,965	-				-0.8
6,134,965	-				+0.0
6,134,965	-				-0.6
6,134,993	+				-1.2
6,134,994	-				-2.0
6,134,999	+				+1.5
6,134,999	+				+0.1
6,134,999	+				+0.2
6,134,999	+				+1.4
6,134,999	+				-0.7
6,134,999	+				-2.5
6,134,999	+				+0.8
6,135,000	-				+1.2
6,135,028	+				-0.2
6,135,028	+				-0.3
6,135,029	-				+0.8
6,135,029	-				-0.2
6,135,029	-				-2.7
6,135,029	-				+1.8
6,135,029	-				+0.8
6,135,032	+				-1.0
6,135,033	-				+0.2
6,135,033	-				+3.6
6,135,118	+		PP_5383	0.19	+1.5
6,135,118	+		PP_5383	0.19	+1.5
6,135,155	+		PP_5383	0.25	-1.3
6,135,156	-		PP_5383	0.25	-1.5
6,135,210	-		PP_5383	0.33	+0.8
6,135,236	+		PP_5383	0.37	+2.0
6,135,237	-		PP_5383	0.37	+0.8
6,135,277	+		PP_5383	0.43	+0.3
6,135,277	+		PP_5383	0.43	-0.2
6,135,278	-		PP_5383	0.43	-0.8
6,135,308	+		PP_5383	0.47	+1.5
6,135,308	+		PP_5383	0.47	-1.8
6,135,308	+		PP_5383	0.47	+0.8
6,135,389	+		PP_5383	0.59	+1.3
6,135,389	+		PP_5383	0.59	-1.6
6,135,609	+				-0.3
6,135,609	+				+0.3
6,135,610	-				+0.8
6,135,640	+				+0.6
6,135,640	+				+0.2
6,135,641	-				+0.6
6,135,641	-				+0.3
6,135,944	-		PP_5384	0.20	-0.5
6,135,944	-		PP_5384	0.20	-0.3
6,135,944	-		PP_5384	0.20	-0.2
6,135,946	+		PP_5384	0.20	+0.8
6,135,947	-		PP_5384	0.20	-2.1
6,135,947	-		PP_5384	0.20	+1.7
6,135,981	-		PP_5384	0.23	-0.8
6,135,984	+		PP_5384	0.23	-0.2
6,135,984	+		PP_5384	0.23	+0.4
6,135,984	+		PP_5384	0.23	-1.4
6,135,984	+		PP_5384	0.23	+1.4
6,135,985	-		PP_5384	0.23	+0.5
6,136,034	+		PP_5384	0.27	+0.2
6,136,046	+		PP_5384	0.27	-0.3
6,136,193	+		PP_5384	0.38	-0.5
6,136,194	-		PP_5384	0.38	+2.4
6,136,194	-		PP_5384	0.38	+0.2
6,136,195	+		PP_5384	0.38	+0.5
6,136,195	+		PP_5384	0.38	-0.0
6,136,195	+		PP_5384	0.38	-0.5
6,136,195	+		PP_5384	0.38	+1.6
6,136,195	+		PP_5384	0.38	-0.4
6,136,195	+		PP_5384	0.38	-3.1
6,136,196	-		PP_5384	0.38	-2.6
6,136,253	+		PP_5384	0.42	-1.7
6,136,253	+		PP_5384	0.42	+0.2
6,136,253	+		PP_5384	0.42	-1.6
6,136,254	-		PP_5384	0.42	+3.6
6,136,254	-		PP_5384	0.42	+0.8
6,136,254	-		PP_5384	0.42	+0.0
6,136,254	-		PP_5384	0.42	+0.9
6,136,254	-		PP_5384	0.42	-0.8
6,136,254	-		PP_5384	0.42	-0.3
6,136,254	-		PP_5384	0.42	-2.2
6,136,261	+		PP_5384	0.43	+0.7
6,136,261	+		PP_5384	0.43	-0.7
6,136,261	+		PP_5384	0.43	-0.7
6,136,261	+		PP_5384	0.43	-2.9
6,136,261	+		PP_5384	0.43	-0.9
6,136,261	+		PP_5384	0.43	+0.9
6,136,261	+		PP_5384	0.43	-1.4
6,136,261	+		PP_5384	0.43	-0.1
6,136,262	-		PP_5384	0.43	-0.6
6,136,262	-		PP_5384	0.43	-0.3
6,136,262	-		PP_5384	0.43	+0.8
6,136,262	-		PP_5384	0.43	+1.2
6,136,303	+		PP_5384	0.46	-0.8
6,136,303	+		PP_5384	0.46	+0.3
6,136,303	+		PP_5384	0.46	-0.4
6,136,304	-		PP_5384	0.46	+0.1
6,136,482	+		PP_5384	0.58	+2.0
6,136,482	+		PP_5384	0.58	-0.5
6,136,483	-		PP_5384	0.58	-2.0
6,136,628	-		PP_5384	0.69	+2.0
6,136,635	+		PP_5384	0.69	-0.8
6,136,636	-		PP_5384	0.69	-2.7
6,136,636	-		PP_5384	0.69	+0.8
6,136,638	+		PP_5384	0.69	+2.4
6,136,638	+		PP_5384	0.69	-0.1
6,136,639	-		PP_5384	0.69	-1.3
6,136,639	-		PP_5384	0.69	-0.3
6,136,639	-		PP_5384	0.69	-1.2
6,136,666	+		PP_5384	0.71	+4.1
6,136,666	+		PP_5384	0.71	+0.5
6,136,736	+		PP_5384	0.76	-0.4
6,136,736	+		PP_5384	0.76	-1.1
6,136,736	+		PP_5384	0.76	+0.5
6,136,736	+		PP_5384	0.76	+0.8
6,136,737	-		PP_5384	0.76	-2.8
6,136,758	+		PP_5384	0.78	-0.5
6,136,759	-		PP_5384	0.78	-0.2
6,136,759	-		PP_5384	0.78	+0.7
6,136,759	-		PP_5384	0.78	+2.2
6,136,885	-		PP_5384	0.87	-0.2
6,136,919	+		PP_5384	0.89	+1.8
6,136,919	+		PP_5384	0.89	-1.1
6,136,919	+		PP_5384	0.89	+0.3
6,136,919	+		PP_5384	0.89	+0.5
6,136,919	+		PP_5384	0.89	+0.3
6,136,919	+		PP_5384	0.89	+2.4
6,136,919	+		PP_5384	0.89	+3.4
6,136,919	+		PP_5384	0.89	+3.8
6,136,920	-		PP_5384	0.89	-1.8
6,136,920	-		PP_5384	0.89	-0.4
6,136,920	-		PP_5384	0.89	+2.4
6,136,920	-		PP_5384	0.89	-0.1
6,136,920	-		PP_5384	0.89	-1.5
6,136,920	-		PP_5384	0.89	-1.1
6,137,007	-				-1.4
6,137,067	+				+0.4
6,137,068	-				-0.7
6,137,079	-				-1.9
6,137,092	+				+0.7
6,137,119	+				-1.3
6,137,119	+				-1.4
6,137,128	+				-1.7
6,137,128	+				-0.5
6,137,128	+				-1.5
6,137,129	-				+1.5
6,137,129	-				+0.3
6,137,191	+		PP_5733	0.24	-0.2
6,137,192	-		PP_5733	0.25	+0.8
6,137,192	-		PP_5733	0.25	-1.1
6,137,225	+		PP_5733	0.34	+0.2
6,137,225	+		PP_5733	0.34	-0.6
6,137,225	+		PP_5733	0.34	-1.2
6,137,226	-		PP_5733	0.34	+1.8
6,137,226	-		PP_5733	0.34	+0.2
6,137,321	+		PP_5733	0.61	-0.6
6,137,321	+		PP_5733	0.61	-0.1
6,137,393	+		PP_5733	0.82	+1.5
6,137,394	-		PP_5733	0.82	-1.3
6,137,397	+		PP_5733	0.83	-0.2
6,137,398	-		PP_5733	0.83	+0.8
6,137,398	-		PP_5733	0.83	+0.8
6,137,413	+		PP_5733	0.87	-2.4
6,137,414	-		PP_5733	0.88	-0.3
6,137,414	-		PP_5733	0.88	-3.2
6,137,414	-		PP_5733	0.88	-2.7
6,137,465	+				-0.5
6,137,466	-				-1.7
6,137,557	-				-0.2
6,137,595	+				-1.4
6,137,596	-				-0.8
6,137,596	-				-0.2
6,137,613	+				+1.2
6,137,807	-		PP_5385	0.21	+1.2
6,137,807	-		PP_5385	0.21	+0.8
6,137,977	+		PP_5385	0.34	+0.4
6,137,977	+		PP_5385	0.34	-1.7
6,137,978	-		PP_5385	0.34	+0.0
6,137,978	-		PP_5385	0.34	+0.8
6,137,984	+		PP_5385	0.35	-0.7
6,137,984	+		PP_5385	0.35	+0.5
6,137,984	+		PP_5385	0.35	+0.8