Strain Fitness in Pseudomonas putida KT2440 around PP_5263

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
6,008,228	+		PP_5262	0.37	+1.9
6,008,228	+		PP_5262	0.37	-1.8
6,008,229	-		PP_5262	0.37	+0.8
6,008,229	-		PP_5262	0.37	-1.0
6,008,345	+		PP_5262	0.45	-1.0
6,008,345	+		PP_5262	0.45	-0.4
6,008,345	+		PP_5262	0.45	+0.2
6,008,346	-		PP_5262	0.45	-0.7
6,008,346	-		PP_5262	0.45	+3.1
6,008,346	-		PP_5262	0.45	-0.1
6,008,346	-		PP_5262	0.45	-3.7
6,008,346	-		PP_5262	0.45	+2.4
6,008,346	-		PP_5262	0.45	+0.8
6,008,367	-		PP_5262	0.47	-1.0
6,008,459	+		PP_5262	0.54	+3.2
6,008,459	+		PP_5262	0.54	-2.7
6,008,459	+		PP_5262	0.54	+1.8
6,008,459	+		PP_5262	0.54	+0.2
6,008,459	+		PP_5262	0.54	+0.9
6,008,459	+		PP_5262	0.54	-0.7
6,008,460	-		PP_5262	0.54	+0.0
6,008,460	-		PP_5262	0.54	-0.6
6,008,460	-		PP_5262	0.54	+0.1
6,008,460	-		PP_5262	0.54	-1.3
6,008,460	-		PP_5262	0.54	+0.8
6,008,460	-		PP_5262	0.54	+2.3
6,008,460	-		PP_5262	0.54	+1.9
6,008,460	-		PP_5262	0.54	+0.5
6,008,460	-		PP_5262	0.54	+2.6
6,008,460	-		PP_5262	0.54	-0.7
6,008,460	-		PP_5262	0.54	+0.8
6,008,591	+		PP_5262	0.63	-1.3
6,008,591	+		PP_5262	0.63	-0.4
6,008,592	-		PP_5262	0.63	+0.8
6,008,619	-		PP_5262	0.65	-1.8
6,008,619	-		PP_5262	0.65	-1.0
6,008,622	-		PP_5262	0.65	-1.5
6,008,622	-		PP_5262	0.65	+0.3
6,008,736	+		PP_5262	0.74	+0.6
6,008,737	-		PP_5262	0.74	-1.6
6,008,755	+		PP_5262	0.75	-1.5
6,008,755	+		PP_5262	0.75	-0.8
6,008,755	+		PP_5262	0.75	+0.1
6,008,912	+		PP_5262	0.86	-1.7
6,008,912	+		PP_5262	0.86	-1.3
6,008,912	+		PP_5262	0.86	+0.8
6,009,079	+				+2.4
6,009,080	-				+0.8
6,009,187	-				+0.3
6,009,228	+				+2.8
6,009,229	-				-2.8
6,009,229	-				+0.1
6,009,386	+		PP_5263	0.12	+3.4
6,009,470	+		PP_5263	0.17	+4.1
6,009,471	-		PP_5263	0.17	+1.0
6,009,471	-		PP_5263	0.17	+0.5
6,009,471	-		PP_5263	0.17	+2.8
6,009,471	-		PP_5263	0.17	+1.1
6,009,659	+		PP_5263	0.28	+2.0
6,009,659	+		PP_5263	0.28	+0.0
6,009,660	-		PP_5263	0.28	-3.6
6,009,915	+		PP_5263	0.44	+1.1
6,010,630	+		PP_5263	0.87	-0.8
6,010,631	-		PP_5263	0.87	-2.9
6,010,631	-		PP_5263	0.87	+0.3
6,010,745	+				-0.2
6,010,746	-				-0.2
6,010,863	+				+1.4
6,010,864	-				-0.6
6,010,900	+				+0.0
6,010,900	+				-0.3
6,010,900	+				+2.6
6,010,900	+				-0.0
6,010,900	+				-0.7
6,010,901	-				-0.8
6,010,901	-				-0.2
6,010,952	-				-0.4
6,010,965	-				-1.0
6,011,007	+				+2.4
6,011,022	+				+2.3
6,011,022	+				+0.8
6,011,023	-				+1.2
6,011,025	+				-2.2
6,011,026	-				-1.2
6,011,026	-				+0.5
6,011,026	-				+0.5
6,011,040	+				+0.1
6,011,041	-				-1.8
6,011,041	-				+0.5
6,011,043	+				+1.5
6,011,043	+				-0.4
6,011,043	+				-3.9
6,011,044	-				-0.0
6,011,044	-				+3.4
6,011,047	+				+0.8
6,011,108	+				-1.0
6,011,108	+				+0.8
6,011,109	-				+1.8
6,011,121	+				+2.9
6,011,145	+				-1.5