Experiment: pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5239 and PP_5240 are separated by 68 nucleotides PP_5240 and PP_5241 overlap by 4 nucleotides
PP_5239: PP_5239 - putative ATP-dependent chelatase, at 5,976,200 to 5,977,690
_5239
PP_5240: PP_5240 - Response regulator, at 5,977,759 to 5,978,127
_5240
PP_5241: PP_5241 - DNA-binding response regulator, LuxR family, at 5,978,124 to 5,979,116
_5241
Position (kb) 5977
5978
5979 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5977.375 kb on + strand, within PP_5239 at 5977.375 kb on + strand, within PP_5239 at 5977.375 kb on + strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.498 kb on - strand, within PP_5239 at 5977.498 kb on - strand, within PP_5239 at 5977.688 kb on + strand at 5977.689 kb on - strand at 5977.689 kb on - strand at 5977.689 kb on - strand at 5977.755 kb on + strand at 5977.755 kb on + strand at 5977.755 kb on + strand at 5977.755 kb on + strand at 5977.755 kb on + strand at 5977.755 kb on + strand at 5977.756 kb on - strand at 5977.756 kb on - strand at 5977.756 kb on - strand at 5977.890 kb on + strand, within PP_5240 at 5977.890 kb on + strand, within PP_5240 at 5977.891 kb on - strand, within PP_5240 at 5977.891 kb on - strand, within PP_5240 at 5977.891 kb on - strand, within PP_5240 at 5977.936 kb on + strand, within PP_5240 at 5978.339 kb on - strand, within PP_5241 at 5978.559 kb on + strand, within PP_5241 at 5978.559 kb on + strand, within PP_5241
Per-strain Table
Position Strand Gene LocusTag Fraction pH 6 remove 5,977,375 + PP_5239 0.79 +1.1 5,977,375 + PP_5239 0.79 +2.2 5,977,375 + PP_5239 0.79 +2.4 5,977,376 - PP_5239 0.79 -0.7 5,977,376 - PP_5239 0.79 +0.1 5,977,376 - PP_5239 0.79 +0.3 5,977,376 - PP_5239 0.79 +3.8 5,977,376 - PP_5239 0.79 -0.9 5,977,376 - PP_5239 0.79 +0.2 5,977,498 - PP_5239 0.87 +1.6 5,977,498 - PP_5239 0.87 -1.8 5,977,688 + +1.6 5,977,689 - -0.6 5,977,689 - +0.5 5,977,689 - +0.8 5,977,755 + +0.8 5,977,755 + +2.0 5,977,755 + -1.0 5,977,755 + +2.8 5,977,755 + -0.1 5,977,755 + -1.3 5,977,756 - -0.4 5,977,756 - -0.2 5,977,756 - -1.0 5,977,890 + PP_5240 0.36 +1.3 5,977,890 + PP_5240 0.36 +1.9 5,977,891 - PP_5240 0.36 +0.8 5,977,891 - PP_5240 0.36 -0.2 5,977,891 - PP_5240 0.36 -0.2 5,977,936 + PP_5240 0.48 +2.4 5,978,339 - PP_5241 0.22 -2.0 5,978,559 + PP_5241 0.44 -1.3 5,978,559 + PP_5241 0.44 -0.4
Or see this region's nucleotide sequence