Strain Fitness in Pseudomonas putida KT2440 around PP_5152

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
5,877,108	+				-0.3
5,877,108	+				+0.3
5,877,108	+				+1.8
5,877,108	+				+0.8
5,877,109	-				-1.9
5,877,109	-				-0.1
5,877,109	-				-2.0
5,877,135	+				-0.8
5,877,135	+				-0.3
5,877,136	-				+1.3
5,877,224	-		PP_5151	0.16	-4.0
5,877,242	+		PP_5151	0.18	-2.2
5,877,243	-		PP_5151	0.18	+0.8
5,877,382	-		PP_5151	0.33	-1.3
5,877,423	+		PP_5151	0.38	+1.2
5,877,423	+		PP_5151	0.38	+0.8
5,877,424	-		PP_5151	0.38	+0.8
5,877,424	-		PP_5151	0.38	+0.5
5,877,424	-		PP_5151	0.38	+1.3
5,877,424	-		PP_5151	0.38	-1.2
5,877,424	-		PP_5151	0.38	+0.0
5,877,424	-		PP_5151	0.38	-0.9
5,877,582	-		PP_5151	0.55	-0.9
5,877,621	+		PP_5151	0.60	+3.1
5,877,621	+		PP_5151	0.60	-3.7
5,877,621	+		PP_5151	0.60	-1.2
5,877,621	+		PP_5151	0.60	-0.9
5,877,621	+		PP_5151	0.60	-1.2
5,877,621	+		PP_5151	0.60	+0.2
5,877,622	-		PP_5151	0.60	-1.2
5,877,622	-		PP_5151	0.60	+3.6
5,877,622	-		PP_5151	0.60	-0.8
5,877,622	-		PP_5151	0.60	+1.4
5,877,622	-		PP_5151	0.60	-1.7
5,877,622	-		PP_5151	0.60	-0.5
5,877,622	-		PP_5151	0.60	-1.7
5,877,639	+		PP_5151	0.62	+1.8
5,877,639	+		PP_5151	0.62	-0.7
5,877,640	-		PP_5151	0.62	-0.8
5,878,017	+				+2.4
5,878,018	-				-1.6
5,878,018	-				-0.8
5,878,043	+				-0.2
5,878,044	-				-2.8
5,878,122	+				+2.0
5,878,122	+				-0.2
5,878,122	+				+0.2
5,878,123	-				+2.8
5,878,393	-		PP_5152	0.34	+1.6
5,878,393	-		PP_5152	0.34	+0.2
5,878,497	+		PP_5152	0.46	-2.4
5,878,498	-		PP_5152	0.46	+0.1
5,878,655	+		PP_5152	0.63	-0.0
5,878,656	-		PP_5152	0.63	-0.6
5,878,656	-		PP_5152	0.63	+0.8
5,878,800	+		PP_5152	0.79	+0.6
5,878,801	-		PP_5152	0.79	+1.3
5,878,814	+		PP_5152	0.80	+4.0
5,878,814	+		PP_5152	0.80	+1.7
5,878,815	-		PP_5152	0.80	+0.8
5,878,950	+				+0.8
5,878,951	-				-1.6
5,878,951	-				-0.3
5,878,951	-				-1.8
5,879,021	+				+0.8
5,879,021	+				-1.0
5,879,103	-				-0.8
5,879,112	+				-1.1
5,879,112	+				-1.5
5,879,113	-				-0.1
5,879,138	-				-0.0
5,879,138	-				-0.0
5,879,358	+		PP_5153	0.27	+2.3
5,879,358	+		PP_5153	0.27	-0.0
5,879,359	-		PP_5153	0.27	-0.2
5,879,359	-		PP_5153	0.27	-0.3
5,879,359	-		PP_5153	0.27	+0.8
5,879,362	-		PP_5153	0.27	+0.3
5,879,362	-		PP_5153	0.27	+3.8
5,879,362	-		PP_5153	0.27	+0.8
5,879,362	-		PP_5153	0.27	+2.1
5,879,374	+		PP_5153	0.29	+0.8
5,879,636	+		PP_5153	0.69	+0.3
5,879,637	-		PP_5153	0.69	-0.0
5,879,765	+		PP_5153	0.88	+3.4
5,879,765	+		PP_5153	0.88	+0.8
5,879,765	+		PP_5153	0.88	-4.1
5,879,766	-				+1.8
5,879,766	-		PP_5153	0.88	+0.8
5,879,821	+				-1.5
5,879,821	+				+1.7
5,879,821	+				+0.7
5,879,821	+				+0.6
5,879,822	-				-0.2
5,879,825	+				+2.4
5,879,825	+				-3.2
5,879,826	-				+1.8
5,879,826	-				+0.8
5,879,838	-				-1.2
5,879,912	+				-2.0
5,879,931	+				+0.3
5,879,931	+				+0.3
5,879,931	+				-0.9
5,879,931	+				-1.1
5,879,931	+				+1.2
5,879,932	-				-1.5
5,879,932	-				+2.4
5,879,932	-				-1.2
5,879,932	-				-0.7
5,879,971	+				+0.9
5,879,971	+				+0.4
5,879,980	+				-3.5