Strain Fitness in Pseudomonas putida KT2440 around PP_5021

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
5,718,722	+		PP_5020	0.74	-0.7
5,718,723	-		PP_5020	0.74	-1.8
5,718,960	-		PP_5020	0.86	-1.0
5,719,227	-				-0.6
5,719,343	+				-0.8
5,719,343	+				-0.3
5,719,343	+				-0.8
5,719,343	+				+1.2
5,719,344	-				+0.3
5,719,344	-				+0.8
5,719,344	-				-0.5
5,719,344	-				-3.1
5,719,345	+				-0.3
5,719,346	-				-2.1
5,719,381	-				-1.5
5,719,381	-				-0.6
5,719,395	+				+0.2
5,719,396	-				-0.5
5,719,633	+				-2.0
5,719,633	+				+0.5
5,719,633	+				+2.4
5,719,634	-				-2.3
5,719,634	-				-1.6
5,719,634	-				+1.3
5,719,822	+		PP_5021	0.18	-1.1
5,719,822	+		PP_5021	0.18	-1.8
5,719,823	-		PP_5021	0.18	-2.8
5,719,877	-		PP_5021	0.21	+0.8
5,720,055	+		PP_5021	0.30	+0.5
5,720,096	+		PP_5021	0.32	-3.1
5,720,121	-		PP_5021	0.33	-0.2
5,720,121	-		PP_5021	0.33	-0.2
5,720,398	+		PP_5021	0.47	-1.5
5,720,809	+		PP_5021	0.69	-1.0
5,720,809	+		PP_5021	0.69	-3.3
5,720,810	-		PP_5021	0.69	+1.4
5,720,810	-				+0.8
5,721,461	+				+0.8
5,721,461	+				-2.9
5,721,461	+				+1.0
5,721,461	+				-0.7
5,721,462	-				+0.2
5,721,462	-				+1.3
5,721,462	-				+0.6
5,721,530	+				-1.5
5,721,876	+		PP_5022	0.47	+1.6
5,721,877	-		PP_5022	0.47	-1.0
5,722,326	+				-0.4
5,722,326	+				-1.2
5,722,327	-				+0.2
5,722,327	-				+1.1
5,722,327	-				+0.8
5,722,361	-		PP_5023	0.11	+0.3
5,722,379	-		PP_5023	0.13	-3.6
5,722,379	-		PP_5023	0.13	+0.7