Strain Fitness in Pseudomonas putida KT2440 around PP_5020

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
5,716,821	-		PP_5019	0.46	+0.8
5,716,821	-		PP_5019	0.46	+0.8
5,717,263	+				-1.3
5,717,263	+				+0.8
5,717,263	+				+0.5
5,717,264	-				+4.1
5,717,264	-				+0.5
5,717,269	+				-0.2
5,717,269	+				+1.8
5,717,270	-				+0.5
5,717,305	+				-0.2
5,717,305	+				-1.5
5,717,305	+				-0.2
5,717,305	+				-0.9
5,717,306	-				-0.1
5,717,306	-				+0.5
5,717,306	-				+0.9
5,717,397	+				-0.6
5,717,476	+				+0.3
5,717,476	+				-1.7
5,717,476	+				+1.5
5,717,476	+				+0.8
5,717,477	-				-1.9
5,717,477	-				-2.2
5,717,477	-				-0.8
5,717,509	+		PP_5020	0.11	-2.2
5,717,509	+		PP_5020	0.11	+0.8
5,717,510	-		PP_5020	0.11	-0.6
5,717,510	-		PP_5020	0.11	+0.8
5,717,510	-		PP_5020	0.11	-1.2
5,717,510	-		PP_5020	0.11	-2.8
5,717,657	-		PP_5020	0.19	-2.7
5,717,717	+		PP_5020	0.22	+1.2
5,717,769	+		PP_5020	0.24	-0.6
5,717,860	+		PP_5020	0.29	-1.5
5,717,866	+		PP_5020	0.29	+0.2
5,717,866	+		PP_5020	0.29	+1.3
5,717,866	+		PP_5020	0.29	+0.8
5,717,866	+		PP_5020	0.29	-0.3
5,717,867	-		PP_5020	0.29	-1.5
5,718,222	+		PP_5020	0.48	+1.8
5,718,308	+		PP_5020	0.52	-3.8
5,718,722	+		PP_5020	0.74	-0.7
5,718,723	-		PP_5020	0.74	-1.8
5,718,960	-		PP_5020	0.86	-1.0
5,719,227	-				-0.6
5,719,343	+				-0.8
5,719,343	+				-0.3
5,719,343	+				-0.8
5,719,343	+				+1.2
5,719,344	-				+0.3
5,719,344	-				+0.8
5,719,344	-				-0.5
5,719,344	-				-3.1
5,719,345	+				-0.3
5,719,346	-				-2.1
5,719,381	-				-1.5
5,719,381	-				-0.6
5,719,395	+				+0.2
5,719,396	-				-0.5
5,719,633	+				-2.0
5,719,633	+				+0.5
5,719,633	+				+2.4
5,719,634	-				-2.3
5,719,634	-				-1.6
5,719,634	-				+1.3
5,719,822	+		PP_5021	0.18	-1.1
5,719,822	+		PP_5021	0.18	-1.8
5,719,823	-		PP_5021	0.18	-2.8
5,719,877	-		PP_5021	0.21	+0.8
5,720,055	+		PP_5021	0.30	+0.5
5,720,096	+		PP_5021	0.32	-3.1
5,720,121	-		PP_5021	0.33	-0.2
5,720,121	-		PP_5021	0.33	-0.2