Strain Fitness in Pseudomonas putida KT2440 around PP_4918

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
5,589,825	-				+0.8
5,589,927	+				-1.8
5,590,151	+		PP_4917	0.28	+3.6
5,590,152	-		PP_4917	0.29	+0.6
5,590,152	-		PP_4917	0.29	+0.8
5,590,163	+		PP_4917	0.30	-3.4
5,590,164	-		PP_4917	0.30	-1.3
5,590,164	-		PP_4917	0.30	+0.8
5,590,186	+		PP_4917	0.33	-2.2
5,590,518	+		PP_4917	0.74	+0.8
5,590,518	+		PP_4917	0.74	-2.4
5,590,518	+		PP_4917	0.74	-2.2
5,590,519	-		PP_4917	0.74	+0.8
5,590,519	-		PP_4917	0.74	+0.8
5,590,519	-		PP_4917	0.74	-2.7
5,590,519	-		PP_4917	0.74	-3.8
5,590,519	-		PP_4917	0.74	+0.8
5,590,519	-		PP_4917	0.74	-2.0
5,590,756	+				-0.0
5,590,756	+				-1.0
5,590,757	-				-1.4
5,590,757	-				-2.5
5,590,757	-				-0.3
5,590,927	+		PP_4918	0.26	-1.2
5,590,927	+		PP_4918	0.26	+0.3
5,590,928	-		PP_4918	0.26	+2.4
5,590,928	-		PP_4918	0.26	+0.3
5,590,990	+		PP_4918	0.40	+0.8
5,590,990	+		PP_4918	0.40	-0.9
5,590,990	+		PP_4918	0.40	+2.8
5,590,991	-		PP_4918	0.40	-1.4
5,591,063	+		PP_4918	0.56	+0.8
5,591,064	-		PP_4918	0.56	+2.4
5,591,064	-		PP_4918	0.56	+0.8
5,591,064	-		PP_4918	0.56	-1.9
5,591,064	-		PP_4918	0.56	+0.8
5,591,065	+		PP_4918	0.57	+3.1
5,591,066	-		PP_4918	0.57	+1.3
5,591,066	-		PP_4918	0.57	+1.8
5,591,188	+		PP_4918	0.84	+0.7
5,591,188	+				+0.8
5,591,188	+		PP_4918	0.84	+1.8
5,591,188	+		PP_4918	0.84	-0.6
5,591,189	-		PP_4918	0.84	-0.9
5,591,189	-		PP_4918	0.84	+2.1
5,591,189	-		PP_4918	0.84	+1.8
5,591,189	-		PP_4918	0.84	+3.1
5,591,189	-		PP_4918	0.84	-0.7
5,591,189	-		PP_4918	0.84	-0.8
5,591,189	-		PP_4918	0.84	-2.0
5,591,189	-		PP_4918	0.84	-3.4
5,591,263	+				+0.4
5,591,263	+				-1.2
5,591,264	-				-2.9
5,591,264	-				-0.6
5,591,264	-				+1.8
5,591,264	-				+2.4
5,591,271	-				-1.5
5,591,378	+		PP_4919	0.20	+0.7
5,591,379	-		PP_4919	0.20	+1.2
5,591,463	+		PP_4919	0.33	-2.7
5,591,463	+		PP_4919	0.33	+0.2
5,591,463	+		PP_4919	0.33	+0.6
5,591,464	-		PP_4919	0.34	+4.5
5,591,464	-		PP_4919	0.34	-0.2
5,591,464	-		PP_4919	0.34	-1.1
5,591,763	-		PP_4919	0.81	+0.8
5,591,763	-		PP_4919	0.81	-0.8
5,591,780	+		PP_4919	0.84	+0.8
5,591,780	+		PP_4919	0.84	+0.1
5,591,780	+		PP_4919	0.84	-0.6
5,591,781	-		PP_4919	0.84	-0.2
5,591,781	-		PP_4919	0.84	-4.1
5,591,796	+		PP_4919	0.86	+2.4
5,591,797	-		PP_4919	0.87	+0.2
5,591,891	+				+0.5
5,591,892	-				-2.5
5,591,909	+				+0.8
5,591,984	+				+0.8
5,591,985	-				-2.4
5,591,989	+				+0.8
5,591,989	+				-2.0
5,591,989	+				+1.3
5,591,990	-				-1.8
5,591,990	-				-0.5
5,592,133	+		PP_4920	0.10	-1.1