Experiment: pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4912 and PP_4913 are separated by 13 nucleotides PP_4913 and PP_4914 overlap by 4 nucleotides
PP_4912: PP_4912 - DNA topoisomerase IV subunit A, at 5,583,473 to 5,585,731
_4912
PP_4913: PP_4913 - conserved protein of unknown function, at 5,585,745 to 5,586,263
_4913
PP_4914: PP_4914 - putative phytase-like protein, at 5,586,260 to 5,587,285
_4914
PP_4915: PP_4915 - DNA topoisomerase IV subunit B, at 5,587,243 to 5,589,147
_4915
Position (kb) 5585
5586
5587 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5585.747 kb on - strand at 5585.826 kb on + strand, within PP_4913 at 5585.826 kb on + strand, within PP_4913 at 5585.827 kb on - strand, within PP_4913 at 5585.866 kb on - strand, within PP_4913 at 5585.949 kb on + strand, within PP_4913 at 5585.950 kb on - strand, within PP_4913 at 5586.089 kb on + strand, within PP_4913 at 5586.089 kb on + strand, within PP_4913 at 5586.228 kb on + strand at 5586.229 kb on - strand at 5586.511 kb on + strand, within PP_4914 at 5586.511 kb on + strand, within PP_4914 at 5586.910 kb on + strand, within PP_4914 at 5586.942 kb on + strand, within PP_4914 at 5587.015 kb on + strand, within PP_4914 at 5587.016 kb on - strand, within PP_4914 at 5587.016 kb on - strand, within PP_4914 at 5587.063 kb on + strand, within PP_4914 at 5587.064 kb on - strand, within PP_4914 at 5587.232 kb on + strand at 5587.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 6 remove 5,585,747 - +4.0 5,585,826 + PP_4913 0.16 -2.0 5,585,826 + PP_4913 0.16 +1.8 5,585,827 - PP_4913 0.16 +2.0 5,585,866 - PP_4913 0.23 +1.8 5,585,949 + PP_4913 0.39 -0.6 5,585,950 - PP_4913 0.39 -1.2 5,586,089 + PP_4913 0.66 +2.1 5,586,089 + PP_4913 0.66 +0.8 5,586,228 + -2.5 5,586,229 - +0.1 5,586,511 + PP_4914 0.24 -0.2 5,586,511 + PP_4914 0.24 -2.4 5,586,910 + PP_4914 0.63 -3.4 5,586,942 + PP_4914 0.66 +0.8 5,587,015 + PP_4914 0.74 +3.2 5,587,016 - PP_4914 0.74 +0.6 5,587,016 - PP_4914 0.74 -0.6 5,587,063 + PP_4914 0.78 +0.4 5,587,064 - PP_4914 0.78 -0.9 5,587,232 + +2.0 5,587,233 - +0.4
Or see this region's nucleotide sequence