Strain Fitness in Pseudomonas putida KT2440 around PP_4839

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
5,504,194	+		PP_4838	0.55	+0.3
5,504,194	+		PP_4838	0.55	-0.5
5,504,221	+		PP_4838	0.57	+0.1
5,504,221	+		PP_4838	0.57	-1.2
5,504,221	+		PP_4838	0.57	-2.4
5,504,222	-		PP_4838	0.57	+3.4
5,504,386	+		PP_4838	0.65	-0.6
5,504,386	+		PP_4838	0.65	+0.2
5,504,387	-		PP_4838	0.65	-1.9
5,504,387	-		PP_4838	0.65	-1.0
5,504,387	-		PP_4838	0.65	+1.1
5,504,387	-		PP_4838	0.65	-3.7
5,504,423	-		PP_4838	0.66	-0.8
5,504,561	-		PP_4838	0.73	+1.5
5,504,561	-		PP_4838	0.73	-0.9
5,504,561	-		PP_4838	0.73	+0.6
5,504,581	+		PP_4838	0.74	+0.8
5,504,581	+		PP_4838	0.74	+1.2
5,504,582	-		PP_4838	0.74	-1.1
5,504,596	+		PP_4838	0.75	-0.2
5,504,596	+		PP_4838	0.75	+1.3
5,504,680	+		PP_4838	0.79	-0.0
5,504,722	+		PP_4838	0.81	-1.6
5,504,722	+		PP_4838	0.81	+1.2
5,504,759	+		PP_4838	0.83	-0.9
5,504,800	+		PP_4838	0.85	+0.3
5,504,801	-		PP_4838	0.85	+0.1
5,504,801	-		PP_4838	0.85	-2.0
5,504,896	+		PP_4838	0.89	+1.4
5,504,897	-		PP_4838	0.89	-1.7
5,504,897	-		PP_4838	0.89	+0.1
5,504,941	+				+0.0
5,504,941	+				+0.4
5,504,941	+				-0.6
5,504,941	+				+3.4
5,505,199	-				+0.2
5,505,199	-				+0.3
5,505,200	+				-1.8
5,505,226	-				+0.6
5,505,282	+				+2.8
5,505,282	+				+0.8
5,505,282	+				-2.0
5,505,282	+				+0.3
5,505,283	-				-1.5
5,505,283	-				-0.2
5,505,417	+		PP_4839	0.18	-0.2
5,505,417	+		PP_4839	0.18	-1.2
5,505,501	+		PP_4839	0.24	+0.6
5,505,501	+		PP_4839	0.24	+0.6
5,505,502	-		PP_4839	0.24	-2.2
5,505,654	+		PP_4839	0.35	+2.3
5,505,654	+		PP_4839	0.35	+1.4
5,505,654	+		PP_4839	0.35	+1.3
5,505,654	+		PP_4839	0.35	+0.6
5,505,655	-		PP_4839	0.35	+0.2
5,505,655	-		PP_4839	0.35	+1.5
5,505,828	+		PP_4839	0.48	+0.4
5,505,829	-		PP_4839	0.48	+0.8
5,505,829	-		PP_4839	0.48	+0.2
5,506,080	+		PP_4839	0.66	-1.1
5,506,081	-		PP_4839	0.66	-1.3
5,506,176	+		PP_4839	0.73	+0.0
5,506,176	+		PP_4839	0.73	+0.8
5,506,176	+		PP_4839	0.73	+1.1
5,506,176	+				-1.8
5,506,176	+		PP_4839	0.73	+1.8
5,506,177	-		PP_4839	0.73	+0.8
5,506,177	-		PP_4839	0.73	-3.0
5,506,215	+		PP_4839	0.76	+0.6
5,506,215	+		PP_4839	0.76	+5.0
5,506,215	+		PP_4839	0.76	-0.5
5,506,499	+				+0.3
5,506,500	-				-2.0
5,506,500	-				+1.0
5,506,500	-				-0.3
5,506,588	-				-0.7
5,506,604	+				-1.9
5,506,605	-				-1.3
5,506,634	+				+1.0
5,506,702	-				-1.3
5,506,707	-				+0.8
5,506,739	+				+0.8
5,506,739	+				+1.0
5,506,740	-				-0.2
5,506,740	-				-1.0
5,506,740	-				-1.8
5,506,740	-				+0.5
5,506,974	+		PP_4840	0.17	-1.0
5,506,974	+		PP_4840	0.17	+1.3
5,506,975	-		PP_4840	0.17	+0.1
5,507,026	-		PP_4840	0.20	-0.5
5,507,030	+		PP_4840	0.21	-0.8
5,507,031	-		PP_4840	0.21	-1.0
5,507,044	-		PP_4840	0.22	+0.2
5,507,152	+		PP_4840	0.29	+1.2
5,507,152	+		PP_4840	0.29	+0.8
5,507,265	+		PP_4840	0.37	+1.2
5,507,265	+		PP_4840	0.37	+1.9
5,507,266	-		PP_4840	0.37	-1.2
5,507,266	-		PP_4840	0.37	-2.5
5,507,266	-		PP_4840	0.37	-0.1
5,507,266	-		PP_4840	0.37	-0.5
5,507,420	+		PP_4840	0.48	+0.3
5,507,421	-		PP_4840	0.48	+1.3
5,507,490	-		PP_4840	0.53	+0.9
5,507,502	+		PP_4840	0.54	-0.3
5,507,503	-		PP_4840	0.54	-1.0
5,507,503	-		PP_4840	0.54	+0.1
5,507,503	-		PP_4840	0.54	-0.2