Strain Fitness in Pseudomonas putida KT2440 around PP_4743

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
5,398,192	-		PP_4742	0.69	+3.6
5,398,256	+		PP_4742	0.73	+1.8
5,398,277	+		PP_4742	0.74	-0.6
5,398,277	+		PP_4742	0.74	+1.0
5,398,278	-		PP_4742	0.74	-0.5
5,398,326	+		PP_4742	0.77	-1.6
5,398,328	+		PP_4742	0.77	-0.8
5,398,329	-		PP_4742	0.77	-1.1
5,398,332	-		PP_4742	0.78	+0.8
5,398,400	+		PP_4742	0.82	+0.1
5,398,498	+		PP_4742	0.87	-0.0
5,398,499	-		PP_4742	0.87	+1.0
5,398,542	+		PP_4742	0.90	-1.6
5,398,650	-				+0.8
5,398,661	+				-0.1
5,398,760	+				+0.8
5,398,816	-		PP_5711	0.20	-1.8
5,398,872	+		PP_5711	0.33	+1.6
5,398,873	-		PP_5711	0.33	+0.4
5,398,886	+		PP_5711	0.36	-0.0
5,398,933	+		PP_5711	0.47	+0.4
5,398,966	+		PP_5711	0.55	-0.8
5,399,156	+				+1.0
5,399,161	-				-1.5
5,399,323	-				+0.9
5,399,410	-		PP_4743	0.15	+4.0
5,399,897	+		PP_4743	0.49	-1.5
5,400,241	+		PP_4743	0.73	-0.5
5,400,242	-		PP_4743	0.73	-2.7
5,400,242	-		PP_4743	0.73	-1.2
5,400,331	+		PP_4743	0.80	+2.4
5,400,360	-		PP_4743	0.82	-1.2
5,400,433	-		PP_4743	0.87	+3.2
5,400,563	+				-0.5
5,400,810	+				-0.6
5,400,810	+				-1.8
5,400,863	+				-1.2
5,400,864	-				-1.3
5,400,864	-				-0.2
5,400,870	+				-0.5
5,400,871	-				-1.0
5,400,898	+				-0.2
5,400,904	-				+0.5
5,400,904	-				-1.7
5,401,033	-				+0.8
5,401,058	-				+1.6
5,401,083	+				+0.8
5,401,132	+				-0.2
5,401,133	-				-1.2
5,401,157	-				+0.6
5,401,210	+				-0.6
5,401,211	-				+1.3
5,401,211	-				+1.6
5,401,211	-				+2.8
5,401,283	+				-1.9
5,401,283	+				+0.2
5,401,284	-				+0.8
5,401,313	+				-0.3
5,401,314	-				-1.5
5,401,314	-				-0.3
5,401,357	+				-1.1
5,401,358	-				+0.2
5,401,358	-				-0.3
5,401,392	+				-0.2
5,401,392	+				+0.4
5,401,392	+				-2.2
5,401,393	-				-1.3
5,401,402	+				+0.8
5,401,403	-				+0.1
5,401,429	-				-2.0
5,401,429	-				+0.8
5,401,509	+				-0.2
5,401,510	-				+0.0
5,401,510	-				-1.5
5,401,510	-				-0.2
5,401,512	+				-1.2