Strain Fitness in Pseudomonas putida KT2440 around PP_4657

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
5,281,561	+				+1.4
5,281,561	+				-0.4
5,281,562	-				-3.8
5,281,676	+				-0.5
5,281,802	+		PP_4656	0.25	-1.8
5,281,802	+		PP_4656	0.25	+0.2
5,281,858	-		PP_4656	0.33	+0.8
5,281,899	-		PP_4656	0.39	-1.1
5,281,928	+		PP_4656	0.43	-0.3
5,281,928	+		PP_4656	0.43	-0.8
5,281,928	+		PP_4656	0.43	+0.8
5,281,928	+		PP_4656	0.43	+2.4
5,281,928	+		PP_4656	0.43	-0.3
5,281,928	+		PP_4656	0.43	-0.2
5,281,929	-		PP_4656	0.43	-0.5
5,281,929	-		PP_4656	0.43	+0.1
5,281,931	+		PP_4656	0.43	+2.0
5,281,932	-		PP_4656	0.43	-1.7
5,281,932	-		PP_4656	0.43	-0.2
5,281,994	+				-0.2
5,281,994	+		PP_4656	0.52	-0.3
5,282,267	+		PP_4656	0.90	+1.2
5,282,268	-		PP_4656	0.90	-0.2
5,282,268	-		PP_4656	0.90	-1.4
5,282,278	-				+1.6
5,282,278	-				-1.3
5,282,286	+				-0.9
5,282,286	+				+1.0
5,282,286	+				-0.3
5,282,286	+				-0.9
5,282,287	-				+0.3
5,282,423	+				+0.1
5,282,424	-				-2.0
5,282,424	-				+2.0
5,282,443	+				-0.7
5,282,443	+				-0.8
5,282,443	+				-3.7
5,282,443	+				-0.9
5,282,443	+				+0.5
5,282,443	+				+2.6
5,282,443	+				+0.8
5,282,444	-				-0.3
5,282,444	-				+4.3
5,282,444	-				+0.4
5,282,444	-				+2.3
5,282,444	-				+0.3
5,282,444	-				+0.4
5,282,448	-				+1.2
5,282,467	-				-2.2
5,282,502	+				-2.3
5,282,502	+				+0.4
5,282,503	-				-0.8
5,282,865	-		PP_4657	0.41	-1.2
5,282,945	+		PP_4657	0.50	-0.9
5,282,945	+		PP_4657	0.50	+1.8
5,282,969	+		PP_4657	0.52	-1.8
5,282,970	-		PP_4657	0.52	-1.6
5,282,970	-		PP_4657	0.52	-3.8
5,283,038	+		PP_4657	0.59	+1.2
5,283,038	+		PP_4657	0.59	-0.3
5,283,038	+		PP_4657	0.59	+2.6
5,283,039	-		PP_4657	0.59	-0.5
5,283,039	-		PP_4657	0.59	-2.3
5,283,039	-		PP_4657	0.59	-1.3
5,283,039	-		PP_4657	0.59	+0.5
5,283,189	+		PP_4657	0.75	-0.9
5,283,310	-		PP_4657	0.88	+0.4
5,283,464	+				-1.2
5,283,464	+				+0.4
5,283,465	-				-0.2
5,283,631	+				-0.3
5,283,721	+				-1.6
5,283,721	+				+1.5
5,283,722	-				+1.0
5,283,771	+				+0.3
5,283,772	-				+0.1
5,283,772	-				+0.4
5,283,772	-				+4.3
5,283,791	+		PP_4658	0.10	-0.6
5,283,791	+		PP_4658	0.10	+2.0
5,283,791	+		PP_4658	0.10	-1.0
5,283,792	-		PP_4658	0.10	+1.8
5,283,792	-		PP_4658	0.10	-0.2
5,283,792	-		PP_4658	0.10	-0.8
5,283,870	-		PP_4658	0.14	+2.4
5,283,870	-		PP_4658	0.14	-0.6
5,283,928	+		PP_4658	0.17	-0.1
5,283,929	-		PP_4658	0.17	-0.5
5,283,941	+		PP_4658	0.18	+0.4
5,283,941	+		PP_4658	0.18	+0.4
5,283,942	-		PP_4658	0.18	-0.5
5,283,942	-		PP_4658	0.18	-0.1
5,283,942	-		PP_4658	0.18	-2.2
5,283,975	-		PP_4658	0.20	+0.3
5,284,140	+		PP_4658	0.28	-1.1
5,284,140	+		PP_4658	0.28	+1.1
5,284,140	+		PP_4658	0.28	-0.9
5,284,141	-		PP_4658	0.28	-0.8
5,284,141	-		PP_4658	0.28	-0.7
5,284,161	-		PP_4658	0.29	+3.4
5,284,161	-		PP_4658	0.29	+0.4
5,284,294	-		PP_4658	0.36	-4.1
5,284,294	-		PP_4658	0.36	-0.8
5,284,302	-		PP_4658	0.37	+0.2
5,284,409	+		PP_4658	0.42	-0.5
5,284,409	+		PP_4658	0.42	+1.3