Strain Fitness in Pseudomonas putida KT2440 around PP_4653

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
5,277,535	+		PP_4652	0.41	-3.0
5,277,535	+		PP_4652	0.41	+0.1
5,277,536	-		PP_4652	0.41	+0.8
5,277,536	-		PP_4652	0.41	-3.2
5,277,560	-		PP_4652	0.43	-3.2
5,277,580	+				-0.2
5,277,581	-		PP_4652	0.44	-0.8
5,277,581	-		PP_4652	0.44	-2.9
5,277,581	-		PP_4652	0.44	-1.0
5,277,735	-		PP_4652	0.57	+0.3
5,277,768	-		PP_4652	0.60	+0.6
5,277,768	-		PP_4652	0.60	-1.0
5,278,152	+				-2.1
5,278,153	-				+1.0
5,278,211	+				-1.5
5,278,354	+				-0.1
5,278,354	+				+0.2
5,278,355	-				-0.2
5,278,377	+				+0.8
5,278,377	+				+0.4
5,278,377	+				-0.6
5,278,378	-				-2.6
5,278,453	+				-0.2
5,278,453	+				-3.2
5,278,454	-				+0.2
5,278,454	-				+0.2
5,278,512	+				+4.1
5,278,512	+				-0.8
5,278,512	+				-0.7
5,278,513	-				+0.2
5,278,513	-				-1.7
5,278,580	+				-0.2
5,278,580	+				-1.6
5,278,581	-				-0.5
5,278,581	-				+0.1
5,278,581	-				+0.0
5,278,581	-				+0.4
5,278,581	-				+1.2
5,278,581	-				-2.1
5,278,701	-		PP_4653	0.16	+0.8
5,278,748	+		PP_4653	0.20	+0.4
5,278,749	-		PP_4653	0.20	-1.9
5,278,749	-		PP_4653	0.20	-1.0
5,278,749	-		PP_4653	0.20	+1.0
5,279,396	+		PP_4653	0.70	-0.9
5,279,396	+		PP_4653	0.70	+0.4
5,279,396	+		PP_4653	0.70	+0.9
5,279,396	+		PP_4653	0.70	+0.8
5,279,396	+		PP_4653	0.70	+0.8
5,279,397	-		PP_4653	0.70	+0.5
5,279,397	-		PP_4653	0.70	-0.2
5,279,397	-		PP_4653	0.70	+2.1
5,279,397	-		PP_4653	0.70	-0.3
5,279,397	-		PP_4653	0.70	+1.6
5,279,397	-		PP_4653	0.70	-1.3
5,279,399	-		PP_4653	0.70	-0.2
5,279,551	-		PP_4653	0.82	-0.0
5,279,578	-		PP_4653	0.84	-0.7
5,279,616	+		PP_4653	0.87	-1.2
5,279,617	-		PP_4653	0.87	+1.4
5,279,617	-		PP_4653	0.87	-1.5
5,279,643	-		PP_4653	0.89	-0.1
5,279,643	-		PP_4653	0.89	+0.6
5,279,659	+				-2.6
5,279,766	+				+1.1
5,279,766	+				-0.1
5,279,766	+				+0.5
5,279,767	-				+0.1
5,279,767	-				+0.2
5,279,767	-				-1.1
5,279,908	+		PP_4654	0.12	+1.4
5,279,909	-		PP_4654	0.12	+3.4
5,279,959	+		PP_4654	0.16	+3.8
5,279,960	-		PP_4654	0.16	+1.6
5,280,151	+		PP_4654	0.34	+0.4
5,280,151	+		PP_4654	0.34	+0.1
5,280,151	+		PP_4654	0.34	-0.2
5,280,151	+		PP_4654	0.34	-0.6
5,280,152	-		PP_4654	0.34	-0.5
5,280,152	-		PP_4654	0.34	+0.6
5,280,265	+		PP_4654	0.44	+0.2
5,280,266	-		PP_4654	0.45	+0.7
5,280,308	-		PP_4654	0.48	+1.5
5,280,308	-		PP_4654	0.48	-0.1
5,280,418	+		PP_4654	0.59	-0.0
5,280,419	-		PP_4654	0.59	-0.8
5,280,419	-		PP_4654	0.59	-0.2
5,280,461	+		PP_4654	0.63	+1.7
5,280,554	+		PP_4654	0.71	-0.2
5,280,637	+		PP_4654	0.79	-0.2
5,280,638	-		PP_4654	0.79	-0.1
5,280,691	-		PP_4654	0.84	+3.4
5,280,727	+		PP_4654	0.87	-0.9
5,280,727	+		PP_4654	0.87	-0.6
5,280,728	-		PP_4654	0.87	+3.3
5,280,728	-		PP_4654	0.87	+1.0
5,280,728	-		PP_4654	0.87	-2.2