Strain Fitness in Pseudomonas putida KT2440 around PP_4652

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
5,276,270	+				+0.8
5,276,270	+		PP_4651	0.70	+0.8
5,276,271	-		PP_4651	0.70	+0.5
5,276,271	-		PP_4651	0.70	-0.3
5,276,292	+		PP_4651	0.72	-2.0
5,276,391	+		PP_4651	0.79	-0.8
5,276,392	-		PP_4651	0.79	-0.2
5,276,392	-				+0.8
5,276,399	-		PP_4651	0.79	-1.6
5,276,399	-		PP_4651	0.79	-3.0
5,276,399	-		PP_4651	0.79	+0.1
5,276,399	-		PP_4651	0.79	+1.7
5,276,536	+		PP_4651	0.89	-0.6
5,276,536	+		PP_4651	0.89	-1.6
5,276,537	-		PP_4651	0.89	-1.0
5,276,548	+		PP_4651	0.90	+1.1
5,276,549	-		PP_4651	0.90	-0.3
5,276,574	+				+0.8
5,276,676	+				+0.8
5,276,676	+				-0.4
5,276,677	-				+1.4
5,276,677	-				-0.1
5,276,685	+				+0.8
5,276,686	-				-1.5
5,276,715	-				+2.9
5,276,769	+				+0.6
5,276,873	-				-0.1
5,276,873	-				-0.6
5,276,940	+				-1.3
5,276,940	+				+0.8
5,276,941	-				-1.9
5,276,941	-				+4.5
5,276,997	+				-1.3
5,276,997	+				-0.4
5,276,997	+				+1.2
5,276,998	-				-0.2
5,277,014	+				+0.8
5,277,160	+				-1.1
5,277,160	+				+0.8
5,277,161	-				+1.1
5,277,262	+		PP_4652	0.18	-1.2
5,277,263	-		PP_4652	0.18	-4.4
5,277,535	+		PP_4652	0.41	-3.0
5,277,535	+		PP_4652	0.41	+0.1
5,277,536	-		PP_4652	0.41	+0.8
5,277,536	-		PP_4652	0.41	-3.2
5,277,560	-		PP_4652	0.43	-3.2
5,277,580	+				-0.2
5,277,581	-		PP_4652	0.44	-0.8
5,277,581	-		PP_4652	0.44	-2.9
5,277,581	-		PP_4652	0.44	-1.0
5,277,735	-		PP_4652	0.57	+0.3
5,277,768	-		PP_4652	0.60	+0.6
5,277,768	-		PP_4652	0.60	-1.0
5,278,152	+				-2.1
5,278,153	-				+1.0
5,278,211	+				-1.5
5,278,354	+				-0.1
5,278,354	+				+0.2
5,278,355	-				-0.2
5,278,377	+				+0.8
5,278,377	+				+0.4
5,278,377	+				-0.6
5,278,378	-				-2.6
5,278,453	+				-0.2
5,278,453	+				-3.2
5,278,454	-				+0.2
5,278,454	-				+0.2
5,278,512	+				+4.1
5,278,512	+				-0.8
5,278,512	+				-0.7
5,278,513	-				+0.2
5,278,513	-				-1.7
5,278,580	+				-0.2
5,278,580	+				-1.6
5,278,581	-				-0.5
5,278,581	-				+0.1
5,278,581	-				+0.0
5,278,581	-				+0.4
5,278,581	-				+1.2
5,278,581	-				-2.1
5,278,701	-		PP_4653	0.16	+0.8
5,278,748	+		PP_4653	0.20	+0.4
5,278,749	-		PP_4653	0.20	-1.9
5,278,749	-		PP_4653	0.20	-1.0
5,278,749	-		PP_4653	0.20	+1.0