Strain Fitness in Pseudomonas putida KT2440 around PP_4647

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
5,271,059	+				-0.8
5,271,060	-				+0.7
5,271,902	+				+1.6
5,271,903	-				-1.1
5,271,903	-				+0.4
5,271,953	+				+0.2
5,271,953	+				-1.5
5,271,955	+				+2.8
5,271,955	+				-2.4
5,271,955	+				-1.4
5,271,980	+				+0.3
5,271,980	+				-1.6
5,271,981	-				-1.1
5,272,006	+				-0.5
5,272,111	+				+0.2
5,272,188	-		PP_4647	0.19	+2.0
5,272,206	+		PP_4647	0.22	-3.4
5,272,206	+		PP_4647	0.22	+0.8
5,272,207	-		PP_4647	0.22	-1.6
5,272,207	-		PP_4647	0.22	+0.2
5,272,221	+		PP_4647	0.24	-1.4
5,272,222	-		PP_4647	0.24	-2.0
5,272,263	+		PP_4647	0.30	+1.8
5,272,333	-		PP_4647	0.40	-0.3
5,272,372	-		PP_4647	0.45	-1.6
5,272,372	-		PP_4647	0.45	+1.8
5,272,476	+		PP_4647	0.60	-0.4
5,272,477	-		PP_4647	0.60	-3.2
5,272,477	-		PP_4647	0.60	+1.0
5,272,526	-		PP_4647	0.67	-2.9
5,272,552	+		PP_4647	0.71	-0.8
5,272,790	+				-2.9
5,272,791	-				+1.6
5,272,950	+				-2.2
5,272,950	+				+1.8
5,272,967	-		PP_4648	0.10	-0.3
5,272,967	-		PP_4648	0.10	-0.4
5,273,331	+		PP_4648	0.42	-0.0
5,273,331	+		PP_4648	0.42	+0.1
5,273,332	-		PP_4648	0.42	-0.1
5,273,344	+		PP_4648	0.44	+1.8
5,273,433	+		PP_4648	0.51	-0.7
5,273,530	+		PP_4648	0.60	+3.1
5,273,531	-		PP_4648	0.60	+0.6
5,273,625	+		PP_4648	0.69	-2.6
5,273,626	-		PP_4648	0.69	-2.3
5,273,626	-		PP_4648	0.69	-1.3
5,273,646	+		PP_4648	0.70	+1.0
5,273,646	+		PP_4648	0.70	+3.8
5,273,646	+		PP_4648	0.70	+0.4
5,273,647	-		PP_4648	0.70	-0.7