Experiment: pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4624 and PP_4625 are separated by 176 nucleotides PP_4625 and PP_4626 overlap by 11 nucleotides PP_4626 and PP_4627 are separated by 97 nucleotides
PP_4624: PP_4624 - putative hydrolase, alpha/beta fold family, at 5,248,916 to 5,249,821
_4624
PP_4625: PP_4625 - anti-holin regulator of holin CidA, at 5,249,998 to 5,250,684
_4625
PP_4626: PP_4626 - holin regulator of murein hydrolases, at 5,250,674 to 5,251,060
_4626
PP_4627: PP_4627 - transcriptional regulator, LysR family, at 5,251,158 to 5,252,039
_4627
Position (kb) 5250
5251
5252 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5249.705 kb on + strand, within PP_4624 at 5249.705 kb on + strand, within PP_4624 at 5249.705 kb on + strand, within PP_4624 at 5249.743 kb on - strand at 5249.743 kb on - strand at 5249.838 kb on + strand at 5249.838 kb on + strand at 5249.838 kb on + strand at 5249.838 kb on + strand at 5249.838 kb on + strand at 5249.839 kb on - strand at 5249.845 kb on - strand at 5249.855 kb on + strand at 5249.856 kb on - strand at 5249.856 kb on - strand at 5249.856 kb on - strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.895 kb on - strand at 5249.895 kb on - strand at 5249.895 kb on - strand at 5249.895 kb on - strand at 5249.895 kb on - strand at 5249.895 kb on - strand at 5249.895 kb on - strand at 5249.895 kb on - strand at 5249.907 kb on + strand at 5249.907 kb on + strand at 5249.908 kb on - strand at 5249.908 kb on - strand at 5249.908 kb on - strand at 5249.908 kb on - strand at 5249.908 kb on - strand at 5250.037 kb on - strand at 5250.162 kb on + strand, within PP_4625 at 5250.524 kb on + strand, within PP_4625 at 5250.594 kb on - strand, within PP_4625 at 5250.611 kb on + strand, within PP_4625 at 5250.612 kb on - strand, within PP_4625 at 5250.612 kb on - strand, within PP_4625 at 5250.632 kb on + strand at 5250.731 kb on + strand, within PP_4626 at 5250.731 kb on + strand, within PP_4626 at 5250.731 kb on + strand, within PP_4626 at 5250.732 kb on - strand, within PP_4626 at 5250.741 kb on - strand, within PP_4626 at 5250.741 kb on - strand, within PP_4626 at 5250.804 kb on + strand, within PP_4626 at 5250.914 kb on + strand, within PP_4626 at 5250.914 kb on + strand, within PP_4626 at 5250.914 kb on + strand, within PP_4626 at 5250.915 kb on - strand, within PP_4626 at 5250.915 kb on - strand, within PP_4626 at 5251.046 kb on + strand at 5251.046 kb on + strand at 5251.046 kb on + strand at 5251.047 kb on - strand at 5251.089 kb on + strand at 5251.435 kb on + strand, within PP_4627 at 5251.436 kb on - strand, within PP_4627 at 5251.436 kb on - strand, within PP_4627 at 5251.436 kb on - strand, within PP_4627 at 5251.624 kb on - strand, within PP_4627 at 5251.719 kb on - strand, within PP_4627 at 5251.734 kb on + strand, within PP_4627 at 5251.735 kb on - strand, within PP_4627 at 5251.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 6 remove 5,249,705 + PP_4624 0.87 -0.0 5,249,705 + PP_4624 0.87 +2.8 5,249,705 + PP_4624 0.87 +0.2 5,249,743 - -2.9 5,249,743 - -1.0 5,249,838 + -3.8 5,249,838 + +0.8 5,249,838 + +1.8 5,249,838 + -2.7 5,249,838 + +1.2 5,249,839 - -1.6 5,249,845 - -0.0 5,249,855 + +0.8 5,249,856 - -1.2 5,249,856 - -0.9 5,249,856 - +0.8 5,249,894 + -0.3 5,249,894 + -2.8 5,249,894 + -0.0 5,249,894 + -0.8 5,249,894 + +0.8 5,249,894 + +0.6 5,249,894 + +2.4 5,249,894 + -0.5 5,249,894 + -1.5 5,249,895 - +4.1 5,249,895 - +1.2 5,249,895 - -2.8 5,249,895 - -1.3 5,249,895 - +3.7 5,249,895 - -2.5 5,249,895 - +0.7 5,249,895 - +2.4 5,249,907 + +2.4 5,249,907 + +0.5 5,249,908 - -0.4 5,249,908 - +1.0 5,249,908 - -0.6 5,249,908 - -2.4 5,249,908 - -1.8 5,250,037 - -0.2 5,250,162 + PP_4625 0.24 +0.4 5,250,524 + PP_4625 0.77 -0.1 5,250,594 - PP_4625 0.87 +2.4 5,250,611 + PP_4625 0.89 -1.1 5,250,612 - PP_4625 0.89 -0.4 5,250,612 - PP_4625 0.89 -1.4 5,250,632 + +0.8 5,250,731 + PP_4626 0.15 -2.9 5,250,731 + PP_4626 0.15 +0.8 5,250,731 + PP_4626 0.15 -1.8 5,250,732 - PP_4626 0.15 -1.6 5,250,741 - PP_4626 0.17 +0.1 5,250,741 - PP_4626 0.17 +0.8 5,250,804 + PP_4626 0.34 -1.8 5,250,914 + PP_4626 0.62 -1.5 5,250,914 + PP_4626 0.62 -1.1 5,250,914 + PP_4626 0.62 +2.2 5,250,915 - PP_4626 0.62 +0.8 5,250,915 - PP_4626 0.62 -0.5 5,251,046 + -0.8 5,251,046 + +1.0 5,251,046 + +0.2 5,251,047 - -1.4 5,251,089 + +3.8 5,251,435 + PP_4627 0.31 +0.1 5,251,436 - PP_4627 0.32 -1.7 5,251,436 - PP_4627 0.32 -0.2 5,251,436 - PP_4627 0.32 +0.8 5,251,624 - PP_4627 0.53 -0.0 5,251,719 - PP_4627 0.64 +0.1 5,251,734 + PP_4627 0.65 -0.1 5,251,735 - PP_4627 0.65 +0.8 5,251,965 - +0.0
Or see this region's nucleotide sequence