Strain Fitness in Pseudomonas putida KT2440 around PP_4607

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
5,228,265	+		PP_4606	0.67	-0.5
5,228,266	-		PP_4606	0.67	+0.8
5,228,266	-		PP_4606	0.67	+0.3
5,228,295	+		PP_4606	0.68	+2.6
5,228,295	+		PP_4606	0.68	+1.1
5,228,295	+		PP_4606	0.68	-0.5
5,228,295	+		PP_4606	0.68	+0.5
5,228,295	+		PP_4606	0.68	+0.3
5,228,296	-		PP_4606	0.68	+1.1
5,228,296	-		PP_4606	0.68	+1.1
5,228,296	-		PP_4606	0.68	+0.8
5,228,296	-		PP_4606	0.68	+2.4
5,228,359	-		PP_4606	0.71	-2.5
5,228,673	+		PP_4606	0.84	-0.2
5,228,674	-		PP_4606	0.84	-1.6
5,228,680	-		PP_4606	0.84	+0.8
5,228,680	-		PP_4606	0.84	+0.2
5,228,680	-		PP_4606	0.84	+1.0
5,228,758	+		PP_4606	0.87	-0.8
5,228,759	-		PP_4606	0.87	+0.9
5,228,877	+				-0.4
5,228,878	-				-0.2
5,228,899	+				-0.7
5,228,955	+				+0.0
5,228,955	+				-0.3
5,228,956	-				-2.1
5,229,114	-				+2.2
5,229,135	-				+3.4
5,229,196	+				+1.8
5,229,207	+				-0.2
5,229,235	+				-0.1
5,229,381	-		PP_4607	0.15	-1.0
5,229,395	-		PP_4607	0.16	-0.6
5,229,437	-		PP_4607	0.21	-0.4
5,229,439	+		PP_4607	0.21	-0.8
5,229,439	+		PP_4607	0.21	+0.3
5,229,439	+		PP_4607	0.21	-0.3
5,229,439	+		PP_4607	0.21	-0.8
5,229,440	-		PP_4607	0.21	-1.3
5,229,506	+		PP_4607	0.28	-2.2
5,229,518	-		PP_4607	0.29	+3.8
5,229,518	-		PP_4607	0.29	-1.5
5,229,518	-		PP_4607	0.29	+0.4
5,229,844	+		PP_4607	0.62	+0.2
5,229,845	-		PP_4607	0.62	-0.8
5,229,845	-		PP_4607	0.62	+0.8
5,230,072	+		PP_4607	0.85	+0.8
5,230,294	+		PP_4608	0.14	+3.5
5,230,295	-		PP_4608	0.15	+0.6
5,230,295	-		PP_4608	0.15	-1.2
5,230,295	-		PP_4608	0.15	+0.8
5,230,295	-		PP_4608	0.15	+1.4
5,230,295	-		PP_4608	0.15	-0.5
5,230,347	+		PP_4608	0.24	-1.9
5,230,348	-				-0.8
5,230,423	+		PP_4608	0.37	+1.0
5,230,522	+		PP_4608	0.54	+0.4
5,230,544	+		PP_4608	0.58	+0.1
5,230,544	+		PP_4608	0.58	-2.5
5,230,544	+		PP_4608	0.58	-1.9
5,230,545	-		PP_4608	0.58	-0.5
5,230,545	-		PP_4608	0.58	+1.9
5,230,575	+		PP_4608	0.63	+0.2
5,230,575	+		PP_4608	0.63	+1.1
5,230,575	+		PP_4608	0.63	+0.9
5,230,576	-				-0.8
5,230,679	+		PP_4608	0.81	-1.1
5,230,680	-		PP_4608	0.81	+0.8
5,230,976	-		PP_4609	0.56	-2.8
5,231,083	+		PP_4609	0.89	-1.3
5,231,083	+		PP_4609	0.89	-2.6
5,231,083	+				+1.8
5,231,083	+		PP_4609	0.89	+0.5
5,231,083	+		PP_4609	0.89	-0.2
5,231,084	-		PP_4609	0.89	-1.8
5,231,084	-		PP_4609	0.89	-0.1
5,231,084	-		PP_4609	0.89	-0.8
5,231,084	-		PP_4609	0.89	-0.5
5,231,179	-				+1.7