Strain Fitness in Pseudomonas putida KT2440 around PP_4510

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
5,122,466	+		PP_4508	0.71	-1.5
5,122,467	-		PP_4508	0.71	-0.4
5,122,524	-		PP_4508	0.77	-0.4
5,122,577	+		PP_4508	0.82	+0.1
5,122,844	+				-1.7
5,122,845	-				+1.7
5,122,875	+				-1.7
5,122,875	+				-0.1
5,122,876	-				-0.7
5,122,890	+				+1.2
5,122,890	+				+0.6
5,122,890	+				-0.3
5,122,902	+				-0.1
5,122,902	+				-0.5
5,122,902	+				-0.7
5,122,921	+				+0.4
5,122,922	-				+0.3
5,122,922	-				-1.3
5,122,948	+				+0.9
5,122,948	+				-0.9
5,122,949	-				+0.3
5,122,964	-				+0.6
5,122,964	-				-1.5
5,122,966	+				-0.1
5,123,023	+		PP_4509	0.12	+2.1
5,123,023	+		PP_4509	0.12	-4.8
5,123,029	+		PP_4509	0.14	-1.7
5,123,030	-		PP_4509	0.15	-1.0
5,123,032	+		PP_4509	0.15	+0.6
5,123,033	-		PP_4509	0.16	-1.4
5,123,096	+		PP_4509	0.36	+0.9
5,123,097	-		PP_4509	0.36	+0.1
5,123,110	+		PP_4509	0.40	-1.5
5,123,111	-		PP_4509	0.41	-3.7
5,123,220	+		PP_4509	0.76	+1.9
5,123,220	+		PP_4509	0.76	-0.6
5,123,233	+		PP_4509	0.80	-1.6
5,123,233	+		PP_4509	0.80	+0.5
5,123,277	-				+0.9
5,123,293	+				-0.0
5,123,293	+				-2.7
5,123,294	-				-1.5
5,123,335	+				+2.9
5,123,384	-				-2.1
5,123,495	+		PP_4510	0.20	-2.5
5,123,495	+		PP_4510	0.20	+0.9
5,123,496	-		PP_4510	0.20	+2.4
5,123,496	-		PP_4510	0.20	+1.2
5,123,496	-		PP_4510	0.20	-2.7
5,123,602	+		PP_4510	0.34	+0.4
5,123,621	-		PP_4510	0.36	+0.7
5,123,626	+		PP_4510	0.37	-0.7
5,123,626	+		PP_4510	0.37	+1.9
5,123,626	+		PP_4510	0.37	+0.2
5,123,684	-		PP_4510	0.44	-0.1
5,123,684	-		PP_4510	0.44	+1.4
5,123,800	-		PP_4510	0.58	+0.3
5,123,869	+		PP_4510	0.67	+0.6
5,123,869	+		PP_4510	0.67	-0.1
5,123,870	-		PP_4510	0.67	+0.9
5,123,870	-		PP_4510	0.67	+2.3
5,123,870	-		PP_4510	0.67	-0.4
5,123,941	+		PP_4510	0.76	+3.0
5,123,941	+		PP_4510	0.76	-2.2
5,123,942	-		PP_4510	0.76	+0.0
5,123,970	+		PP_4510	0.80	+0.2
5,123,970	+		PP_4510	0.80	+0.9
5,123,970	+		PP_4510	0.80	-2.2
5,123,970	+		PP_4510	0.80	+0.5
5,123,970	+		PP_4510	0.80	+1.0
5,123,970	+		PP_4510	0.80	+1.5
5,123,970	+		PP_4510	0.80	+1.4
5,123,970	+		PP_4510	0.80	+0.1
5,123,971	-		PP_4510	0.80	-1.6
5,123,971	-		PP_4510	0.80	-3.8
5,123,971	-		PP_4510	0.80	+1.8
5,123,971	-		PP_4510	0.80	+1.4
5,123,971	-		PP_4510	0.80	+3.4
5,123,971	-				+0.3
5,123,971	-		PP_4510	0.80	+0.9
5,123,971	-		PP_4510	0.80	+1.9
5,123,971	-		PP_4510	0.80	-0.9
5,123,971	-		PP_4510	0.80	-0.0
5,123,989	+		PP_4510	0.82	-1.5
5,123,989	+		PP_4510	0.82	-1.2
5,123,989	+		PP_4510	0.82	+0.9
5,123,990	-		PP_4510	0.82	-1.1
5,124,084	-				-0.4
5,124,315	+				-0.5
5,124,560	+		PP_4511	0.39	-1.3
5,124,713	-		PP_4511	0.59	+0.9
5,124,733	-		PP_4511	0.62	-1.8
5,124,819	+		PP_4511	0.73	+1.6
5,124,850	+		PP_4511	0.77	+1.4
5,124,850	+		PP_4511	0.77	-1.7
5,124,850	+		PP_4511	0.77	-1.9
5,124,850	+		PP_4511	0.77	-0.3
5,124,850	+		PP_4511	0.77	+0.4
5,124,851	-		PP_4511	0.77	-1.0
5,124,937	+		PP_4511	0.88	-1.5
5,124,937	+		PP_4511	0.88	-3.0
5,124,938	-		PP_4511	0.88	+1.6
5,124,938	-		PP_4511	0.88	+2.1
5,124,939	+		PP_4511	0.89	-1.5
5,124,939	+		PP_4511	0.89	-3.7
5,124,939	+		PP_4511	0.89	-0.1
5,124,939	+		PP_4511	0.89	+0.1
5,124,939	+		PP_4511	0.89	-2.3
5,124,940	-		PP_4511	0.89	+0.6
5,124,940	-		PP_4511	0.89	-0.6
5,124,940	-		PP_4511	0.89	+2.4
5,124,940	-		PP_4511	0.89	-0.0
5,124,940	-		PP_4511	0.89	-0.2
5,124,940	-		PP_4511	0.89	-3.3
5,124,987	+				-2.3
5,124,987	+				+1.9
5,124,988	-				-0.1
5,125,107	+				+2.8
5,125,108	-				-0.3
5,125,108	-				+0.5