Strain Fitness in Pseudomonas putida KT2440 around PP_4492

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
5,102,825	-		PP_4491	0.32	+0.1
5,103,066	+				-0.2
5,103,066	+				+1.9
5,103,067	-				-1.2
5,103,112	+				+1.0
5,103,112	+				+1.8
5,103,112	+				-0.5
5,103,112	+				+0.8
5,103,113	-				-0.2
5,103,113	-				+0.8
5,103,113	-				+0.2
5,103,113	-				-3.9
5,103,113	-				-0.1
5,103,384	+				-1.2
5,103,384	+				-0.8
5,103,384	+				-2.2
5,103,384	+				-0.7
5,103,385	-				-2.6
5,103,385	-				+0.2
5,103,458	-				+0.8
5,103,471	+				+0.8
5,103,472	-				-0.7
5,103,472	-				+0.8
5,103,472	-				+1.3
5,103,472	-				+0.3
5,103,472	-				+0.8
5,103,634	+				-3.6
5,103,634	+				-0.2
5,103,635	-				+0.3
5,103,635	-				-1.5
5,103,635	-				-0.4
5,103,635	-				+1.1
5,103,673	+				+0.8
5,103,674	-				+1.8
5,103,686	+				-3.2
5,103,686	+				-0.3
5,103,687	-				+1.2
5,103,687	-				-0.4
5,103,687	-				+0.8
5,103,712	+				+0.8
5,103,712	+				+1.8
5,103,713	-				+0.3
5,103,728	-				+0.7
5,103,889	+				+1.5
5,103,890	-				+2.4
5,103,890	-				+1.5
5,103,890	-				+0.0
5,103,890	-				-0.7
5,103,890	-				-2.0
5,103,950	-		PP_4492	0.15	-0.5
5,103,987	+		PP_4492	0.18	-0.4
5,104,024	+		PP_4492	0.21	+3.4
5,104,024	+		PP_4492	0.21	+1.3
5,104,025	-		PP_4492	0.21	-1.3
5,104,025	-		PP_4492	0.21	+2.8
5,104,025	-		PP_4492	0.21	-2.0
5,104,047	-		PP_4492	0.23	+1.3
5,104,047	-		PP_4492	0.23	+0.5
5,104,155	-		PP_4492	0.32	+0.5
5,104,155	-		PP_4492	0.32	+1.3
5,104,240	+		PP_4492	0.39	-1.0
5,104,241	-		PP_4492	0.39	+0.0
5,104,388	+		PP_4492	0.51	+1.4
5,104,389	-		PP_4492	0.51	-0.5
5,104,389	-		PP_4492	0.51	+2.2
5,104,389	-		PP_4492	0.51	-0.1
5,104,421	+		PP_4492	0.54	+0.9
5,104,421	+		PP_4492	0.54	+2.6
5,104,422	-		PP_4492	0.54	-2.3
5,104,422	-		PP_4492	0.54	-0.6
5,104,492	+		PP_4492	0.60	-2.5
5,104,492	+		PP_4492	0.60	+3.4
5,104,492	+		PP_4492	0.60	+2.0
5,104,495	+		PP_4492	0.60	-1.0
5,104,495	+		PP_4492	0.60	+0.3
5,104,495	+		PP_4492	0.60	+1.1
5,104,495	+		PP_4492	0.60	+1.1
5,104,496	-		PP_4492	0.60	+0.8
5,104,496	-		PP_4492	0.60	-0.8
5,104,496	-		PP_4492	0.60	+1.2
5,104,496	-		PP_4492	0.60	-2.3
5,104,496	-		PP_4492	0.60	+1.8
5,104,496	-		PP_4492	0.60	-3.3
5,104,496	-		PP_4492	0.60	-2.2
5,104,496	-		PP_4492	0.60	-0.7
5,104,496	-		PP_4492	0.60	+4.0
5,104,496	-		PP_4492	0.60	+1.0
5,104,795	+		PP_4492	0.85	+1.8
5,104,796	-		PP_4492	0.85	+1.7
5,104,927	+				+0.8
5,104,927	+				+0.4
5,104,928	-				-0.9
5,104,928	-				-0.0
5,104,962	+				+0.5
5,104,962	+				-0.7
5,104,963	-				+0.1
5,104,963	-				-2.7
5,104,963	-				+1.3
5,104,963	-				+2.5
5,105,037	-				+0.6
5,105,104	+				-1.6
5,105,105	-				-0.0
5,105,105	-				+1.4
5,105,165	+				-1.2
5,105,235	+				+1.8
5,105,276	-				-1.0
5,105,276	-				-0.2
5,105,276	-				-2.6
5,105,276	-				-1.5
5,105,288	+				-0.7
5,105,289	-				-0.3
5,105,289	-				-0.4
5,105,289	-				+0.3
5,105,289	-				-3.6
5,105,637	+		PP_4493	0.18	-0.4
5,105,637	+		PP_4493	0.18	-1.8
5,105,637	+		PP_4493	0.18	+1.4
5,105,637	+		PP_4493	0.18	+2.4
5,105,947	+		PP_4493	0.28	-1.0
5,105,948	-		PP_4493	0.28	-2.2
5,105,948	-		PP_4493	0.28	+0.4
5,105,971	+		PP_4493	0.29	+0.7
5,105,972	-		PP_4493	0.29	-1.7