Strain Fitness in Pseudomonas putida KT2440 around PP_4468

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
5,073,767	+		PP_5691	0.21	+1.4
5,073,767	+		PP_5691	0.21	-0.4
5,073,767	+		PP_5691	0.21	-0.6
5,073,767	+		PP_5691	0.21	+3.2
5,073,796	-		PP_5691	0.27	+0.2
5,073,837	+		PP_5691	0.36	+2.3
5,073,961	-		PP_5691	0.64	+4.2
5,074,008	-		PP_5691	0.74	+1.2
5,074,040	+		PP_5691	0.82	+0.8
5,074,040	+		PP_5691	0.82	-1.5
5,074,040	+		PP_5691	0.82	+2.8
5,074,040	+		PP_5691	0.82	+0.1
5,074,041	-		PP_5691	0.82	+1.6
5,074,041	-		PP_5691	0.82	+0.2
5,074,045	-		PP_5691	0.83	-1.0
5,074,045	-		PP_5691	0.83	-2.9
5,074,094	+				-1.6
5,074,113	-				+0.1
5,074,137	+				+2.4
5,074,138	-				-1.4
5,074,209	+				-0.7
5,074,209	+				-1.7
5,074,210	-				-2.0
5,074,236	-		PP_5692	0.17	+2.4
5,074,246	-		PP_5692	0.19	+0.8
5,074,281	+		PP_5692	0.28	-2.0
5,074,281	+		PP_5692	0.28	-1.5
5,074,281	+		PP_5692	0.28	-1.9
5,074,281	+		PP_5692	0.28	-3.0
5,074,282	-		PP_5692	0.28	+0.7
5,074,282	-		PP_5692	0.28	-0.9
5,074,282	-		PP_5692	0.28	+0.4
5,074,282	-		PP_5692	0.28	-0.5
5,074,282	-		PP_5692	0.28	+3.8
5,074,282	-		PP_5692	0.28	-0.7
5,074,282	-		PP_5692	0.28	-1.7
5,074,384	+		PP_5692	0.54	+0.4
5,074,385	-		PP_5692	0.54	+0.8
5,074,461	+		PP_5692	0.74	-0.2
5,074,461	+		PP_5692	0.74	+0.8
5,074,461	+		PP_5692	0.74	-0.2
5,074,462	-		PP_5692	0.74	-0.5
5,074,463	+		PP_5692	0.74	-1.2
5,074,464	-		PP_5692	0.75	-1.0
5,074,464	-		PP_5692	0.75	-0.4
5,074,464	-		PP_5692	0.75	-1.5
5,074,464	-		PP_5692	0.75	-0.1
5,074,492	-		PP_5692	0.82	+1.6
5,074,502	-		PP_5692	0.84	-0.7
5,074,615	+				-0.8
5,074,616	-				-0.0
5,074,630	-				-1.4
5,074,630	-				-0.2
5,074,721	+				-0.5
5,074,721	+				-0.3
5,074,721	+				-1.5
5,074,722	-				-0.4
5,074,722	-				+1.0
5,074,722	-				+0.8
5,074,722	-				+1.0
5,074,722	-				+2.4
5,074,722	-				+0.5
5,074,724	-				-3.1
5,074,724	-				+1.4
5,074,786	-				+1.8
5,074,786	-				+2.4
5,074,792	-				+0.7
5,074,840	+		PP_4468	0.19	+0.2
5,074,841	-		PP_4468	0.20	+0.6
5,074,841	-		PP_4468	0.20	+0.3
5,074,876	+		PP_4468	0.27	+1.4
5,074,876	+		PP_4468	0.27	+0.8
5,074,918	-		PP_4468	0.35	-2.3
5,074,983	+		PP_4468	0.48	-0.5
5,074,983	+		PP_4468	0.48	+1.3
5,075,037	+		PP_4468	0.59	+1.0
5,075,037	+		PP_4468	0.59	-1.5
5,075,038	-		PP_4468	0.60	+0.8
5,075,067	+		PP_4468	0.65	+0.0
5,075,067	+				+2.8
5,075,067	+		PP_4468	0.65	-2.5
5,075,067	+		PP_4468	0.65	-0.6
5,075,067	+		PP_4468	0.65	-1.9
5,075,068	-		PP_4468	0.66	-1.2
5,075,068	-		PP_4468	0.66	+1.8
5,075,099	-		PP_4468	0.72	+1.9
5,075,099	-		PP_4468	0.72	-1.2
5,075,099	-		PP_4468	0.72	-0.9
5,075,109	+		PP_4468	0.74	-0.6
5,075,109	+		PP_4468	0.74	-0.2
5,075,109	+		PP_4468	0.74	-2.7
5,075,109	+		PP_4468	0.74	+1.8
5,075,109	+		PP_4468	0.74	-1.2
5,075,109	+		PP_4468	0.74	+1.5
5,075,110	-		PP_4468	0.74	-2.2
5,075,110	-				+0.3
5,075,110	-		PP_4468	0.74	+1.5
5,075,110	-		PP_4468	0.74	+1.1
5,075,110	-		PP_4468	0.74	+0.2
5,075,140	+		PP_4468	0.80	-0.7
5,075,140	+		PP_4468	0.80	+1.6
5,075,176	-		PP_4468	0.88	+0.1
5,075,234	+				-2.5
5,075,234	+				+0.8
5,075,264	+				-4.2
5,075,264	+				-0.4
5,075,264	+				-0.3
5,075,265	-				-0.2
5,075,346	+				-0.4
5,075,347	-				-1.5
5,075,347	-				+0.8
5,075,347	-				-2.2
5,075,364	-				+1.3
5,075,395	+				-2.7
5,075,395	+				+0.8
5,075,395	+				-0.1
5,075,396	-				+0.2
5,075,396	-				+2.2
5,075,404	+				-1.2
5,075,404	+				+1.3
5,075,405	-				-0.7
5,075,405	-				+0.8
5,075,405	-				+0.1
5,075,434	+				-0.7
5,075,584	+		PP_t58	0.39	+0.8
5,075,585	-		PP_t58	0.40	-2.5
5,075,619	+		PP_t58	0.88	-0.7
5,075,619	+		PP_t58	0.88	+0.8
5,075,619	+		PP_t58	0.88	-2.2
5,075,662	+				-1.7
5,075,663	-				-4.0
5,075,663	-				+0.3
5,075,717	+				-1.7
5,075,717	+				-2.5
5,075,739	+				+0.8
5,075,739	+				-3.1
5,075,739	+				-2.3
5,075,739	+				-0.7
5,075,739	+				+0.8
5,075,739	+				-2.4
5,075,739	+				-0.2
5,075,740	-				-1.0
5,075,740	-				+0.8
5,075,740	-				+4.3
5,075,747	+				-1.2
5,075,747	+				-1.2
5,075,757	+				-3.5
5,075,758	-				-0.4
5,075,771	+		PP_t57	0.13	-0.4
5,075,771	+		PP_t57	0.13	-1.2
5,075,771	+		PP_t57	0.13	+0.8
5,075,772	-		PP_t57	0.14	-0.2
5,075,772	-		PP_t57	0.14	-2.4
5,075,772	-		PP_t57	0.14	-0.3
5,075,823	-		PP_t57	0.88	+1.5
5,075,834	-				+3.2
5,075,876	+				-1.7
5,075,877	-				-1.0
5,075,923	+				-1.5
5,075,924	-				+0.0
5,075,953	+				-0.2
5,075,954	-				-2.5
5,075,957	-				-0.1
5,075,957	-				-1.5
5,076,018	+		PP_4469	0.13	+0.1
5,076,200	+		PP_4469	0.43	+1.4