Strain Fitness in Pseudomonas putida KT2440 around PP_4349

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
4,940,810	-		PP_4348	0.24	+1.0
4,941,051	+		PP_4348	0.46	-3.0
4,941,051	+		PP_4348	0.46	+2.4
4,941,167	+		PP_4348	0.56	+1.0
4,941,298	-		PP_4348	0.68	+0.9
4,941,301	+		PP_4348	0.69	-0.2
4,941,301	+		PP_4348	0.69	-0.4
4,941,518	-		PP_4348	0.88	-0.3
4,941,523	+		PP_4348	0.89	-1.0
4,941,712	+				+4.3
4,941,852	+		PP_4349	0.20	+0.1
4,941,853	-		PP_4349	0.20	-2.4
4,941,853	-		PP_4349	0.20	-0.3
4,941,925	+		PP_4349	0.28	-0.7
4,941,927	+		PP_4349	0.28	-1.1
4,941,946	+		PP_4349	0.31	-2.1
4,942,031	+		PP_4349	0.40	-2.0
4,942,033	+		PP_4349	0.41	-0.4
4,942,033	+		PP_4349	0.41	-0.6
4,942,142	-		PP_4349	0.53	-3.5
4,942,291	-		PP_4349	0.70	+0.0
4,942,468	-				+0.1
4,942,544	+				-1.3
4,942,587	+				+5.2
4,942,592	-				+0.9
4,942,592	-				-0.1
4,942,592	-				-3.0
4,942,748	-		PP_4350	0.16	-0.6
4,942,800	-		PP_4350	0.20	+0.9
4,942,848	-		PP_4350	0.24	+0.1
4,942,909	+		PP_4350	0.29	-0.1
4,942,963	+		PP_4350	0.34	-1.3
4,943,116	+		PP_4350	0.47	+4.2
4,943,202	+		PP_4350	0.55	-0.6
4,943,203	-		PP_4350	0.55	-1.2
4,943,499	-		PP_4350	0.80	+0.6
4,943,501	+		PP_4350	0.80	+0.9