Strain Fitness in Pseudomonas putida KT2440 around PP_4345

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
4,936,007	-		PP_4344	0.73	+0.6
4,936,007	-		PP_4344	0.73	+0.6
4,936,149	-		PP_4344	0.79	+1.0
4,936,149	-		PP_4344	0.79	-0.5
4,936,222	+		PP_4344	0.83	+0.2
4,936,222	+		PP_4344	0.83	-0.3
4,936,222	+		PP_4344	0.83	+1.2
4,936,222	+		PP_4344	0.83	+0.6
4,936,223	-		PP_4344	0.83	-2.1
4,936,223	-		PP_4344	0.83	-0.5
4,936,223	-		PP_4344	0.83	-0.1
4,936,223	-		PP_4344	0.83	-0.2
4,936,226	+		PP_4344	0.83	+1.2
4,936,227	-		PP_4344	0.83	-1.5
4,936,400	-				+1.3
4,936,402	-				-1.0
4,936,794	+				-1.0
4,936,794	+				+0.3
4,936,794	+				-1.4
4,936,795	-				-0.6
4,936,795	-				-2.5
4,936,877	+				-0.6
4,936,877	+				+0.6
4,936,878	-				+0.2
4,936,887	+				-0.5
4,936,888	-				-0.6
4,936,940	+				-0.5
4,936,947	-				+2.0
4,936,947	-				-1.7
4,936,982	+				-1.1
4,937,024	+				+1.4
4,937,030	+				+2.0
4,937,031	-				-0.5
4,937,054	+				+0.9
4,937,070	+				-3.1
4,937,070	+				-1.1
4,937,099	-		PP_4345	0.13	+3.2
4,937,220	-		PP_4345	0.31	-0.7
4,937,223	+		PP_4345	0.31	-0.8
4,937,223	+		PP_4345	0.31	-0.1
4,937,234	+		PP_4345	0.33	-1.5
4,937,235	-		PP_4345	0.33	-0.3
4,937,283	+		PP_4345	0.40	+0.9
4,937,283	+		PP_4345	0.40	-0.6
4,937,283	+		PP_4345	0.40	-0.4
4,937,283	+		PP_4345	0.40	-0.4
4,937,283	+		PP_4345	0.40	-1.1
4,937,284	-		PP_4345	0.40	+0.3
4,937,374	+		PP_4345	0.53	-1.5
4,937,374	+		PP_4345	0.53	-0.7
4,937,378	+		PP_4345	0.54	+0.9
4,937,484	-		PP_4345	0.69	-0.7
4,937,567	+		PP_4345	0.81	-2.3
4,937,661	-				+1.4
4,937,698	-				+0.9
4,937,698	-				+0.5
4,937,698	-				+0.1
4,937,709	-				-0.7
4,937,709	-				-2.5
4,937,822	+		PP_4346	0.12	-1.8
4,937,822	+		PP_4346	0.12	-3.4
4,937,904	-		PP_4346	0.20	-0.8
4,937,919	+		PP_4346	0.21	+0.2
4,937,920	-		PP_4346	0.21	+0.4
4,937,920	-		PP_4346	0.21	-1.2
4,937,996	-		PP_4346	0.29	+0.4
4,938,008	-		PP_4346	0.30	+1.5
4,938,014	-		PP_4346	0.30	+0.9
4,938,016	+		PP_4346	0.30	-0.9
4,938,017	-		PP_4346	0.31	-0.7
4,938,096	+		PP_4346	0.38	-1.1
4,938,096	+		PP_4346	0.38	-0.4
4,938,097	-		PP_4346	0.38	+0.7
4,938,156	-		PP_4346	0.44	+0.9
4,938,172	+		PP_4346	0.45	+0.9
4,938,195	-		PP_4346	0.47	-0.3
4,938,195	-		PP_4346	0.47	-1.6
4,938,195	-		PP_4346	0.47	-1.6
4,938,221	+		PP_4346	0.50	-3.3
4,938,222	-		PP_4346	0.50	-1.3
4,938,249	-		PP_4346	0.52	-0.4
4,938,353	+		PP_4346	0.62	-0.3
4,938,354	-		PP_4346	0.62	+0.0
4,938,354	-		PP_4346	0.62	-3.3
4,938,354	-		PP_4346	0.62	+0.8
4,938,355	+		PP_4346	0.62	+1.2
4,938,375	+		PP_4346	0.64	+4.2
4,938,375	+		PP_4346	0.64	+0.5
4,938,375	+		PP_4346	0.64	+0.9
4,938,376	-		PP_4346	0.64	-0.9
4,938,376	-		PP_4346	0.64	+4.2
4,938,514	+		PP_4346	0.77	-0.7
4,938,514	+		PP_4346	0.77	+0.3
4,938,514	+		PP_4346	0.77	+0.0
4,938,515	-		PP_4346	0.78	-0.1
4,938,515	-		PP_4346	0.78	+0.1
4,938,515	-		PP_4346	0.78	+0.8
4,938,624	+		PP_4346	0.88	-0.1
4,938,624	+		PP_4346	0.88	-0.7
4,938,624	+		PP_4346	0.88	+0.9
4,938,624	+		PP_4346	0.88	+0.1
4,938,625	-		PP_4346	0.88	-2.4
4,938,625	-		PP_4346	0.88	+4.8
4,938,631	-		PP_4346	0.88	-0.3
4,938,690	+				+0.5
4,938,691	-				+0.6