Strain Fitness in Pseudomonas putida KT2440 around PP_4313

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
4,904,162	-				-0.2
4,904,185	+				+0.2
4,904,185	+				-0.8
4,904,185	+				+0.5
4,904,185	+				+0.2
4,904,186	-				+0.5
4,904,186	-				+1.2
4,904,186	-				-0.8
4,904,186	-				-2.3
4,904,186	-				+0.1
4,904,186	-				-1.2
4,904,264	+		PP_4312	0.14	-0.7
4,904,264	+		PP_4312	0.14	+0.3
4,904,264	+		PP_4312	0.14	+1.8
4,904,265	-		PP_4312	0.14	+1.9
4,904,265	-		PP_4312	0.14	-3.4
4,904,268	+		PP_4312	0.15	+0.5
4,904,269	-		PP_4312	0.15	+0.1
4,904,269	-		PP_4312	0.15	+1.1
4,904,269	-		PP_4312	0.15	+0.5
4,904,269	-		PP_4312	0.15	-1.2
4,904,385	+		PP_4312	0.32	+0.8
4,904,385	+		PP_4312	0.32	-1.8
4,904,386	-		PP_4312	0.32	-0.5
4,904,386	-		PP_4312	0.32	+0.6
4,904,386	-		PP_4312	0.32	+3.4
4,904,386	-		PP_4312	0.32	-0.0
4,904,403	+		PP_4312	0.35	-2.3
4,904,403	+		PP_4312	0.35	-1.9
4,904,403	+		PP_4312	0.35	-0.4
4,904,404	-		PP_4312	0.35	+0.8
4,904,454	+		PP_4312	0.43	-2.3
4,904,520	+		PP_4312	0.53	+1.8
4,904,520	+		PP_4312	0.53	-0.6
4,904,520	+		PP_4312	0.53	-0.2
4,904,521	-		PP_4312	0.53	+0.4
4,904,521	-		PP_4312	0.53	+1.8
4,904,526	+		PP_4312	0.54	+1.1
4,904,526	+		PP_4312	0.54	-1.4
4,904,527	-		PP_4312	0.54	-0.3
4,904,527	-		PP_4312	0.54	+2.6
4,904,583	+		PP_4312	0.62	+2.4
4,904,583	+		PP_4312	0.62	-0.6
4,904,584	-		PP_4312	0.62	-0.8
4,904,612	+		PP_4312	0.67	-2.2
4,904,613	-		PP_4312	0.67	-0.6
4,904,868	+				-1.0
4,905,002	+				-0.5
4,905,002	+				+0.2
4,905,003	-				-1.8
4,905,003	-				+0.4
4,905,008	-				+0.8
4,905,033	+				-0.4
4,905,033	+				-1.8
4,905,033	+				+0.8
4,905,033	+				+0.3
4,905,034	-				-0.3
4,905,157	-		PP_4313	0.26	-2.5
4,905,173	+		PP_4313	0.31	+1.0
4,905,174	-		PP_4313	0.31	+2.7
4,905,218	+		PP_4313	0.44	+0.1
4,905,219	-		PP_4313	0.45	-2.2
4,905,236	+		PP_4313	0.50	+1.4
4,905,324	+		PP_4313	0.76	+3.1
4,905,410	+				+0.8
4,905,410	+				+0.1
4,905,411	-				-2.5
4,905,486	-				-1.8
4,905,704	-		PP_4314	0.35	-0.0
4,905,706	+		PP_4314	0.35	-0.6
4,905,707	-		PP_4314	0.35	-0.3
4,905,716	+		PP_4314	0.37	-1.3
4,905,716	+		PP_4314	0.37	-0.0
4,905,717	-		PP_4314	0.37	+0.8
4,905,717	-		PP_4314	0.37	+0.5
4,905,869	+		PP_4314	0.69	-1.5
4,905,869	+		PP_4314	0.69	-0.8
4,905,876	-		PP_4314	0.70	-1.1
4,905,977	+				-1.8
4,905,978	-				-1.0
4,905,978	-				+0.8
4,905,978	-				+0.1
4,905,980	-				+0.8
4,905,980	-				-0.8
4,905,980	-				+0.4
4,906,007	+				+0.8
4,906,008	-				+0.8
4,906,010	+				-1.4
4,906,010	+				-0.1
4,906,011	-				-3.4
4,906,011	-				+0.2
4,906,016	+				+0.8
4,906,016	+				+1.8
4,906,016	+				+0.6
4,906,016	+				+1.1
4,906,016	+				+0.2
4,906,016	+				+1.1
4,906,016	+				+0.3
4,906,016	+				+0.2
4,906,016	+				+0.0
4,906,016	+				-0.5
4,906,016	+				+2.4
4,906,017	-				+0.2
4,906,017	-				+1.8
4,906,017	-				-1.2
4,906,017	-				+0.9
4,906,034	+				-1.1
4,906,035	-				+0.8
4,906,355	+		PP_4315	0.44	+2.7
4,906,355	+		PP_4315	0.44	-0.2
4,906,355	+				+0.8
4,906,355	+		PP_4315	0.44	-2.6
4,906,355	+		PP_4315	0.44	+3.2
4,906,355	+		PP_4315	0.44	-0.3
4,906,356	-		PP_4315	0.44	-1.0
4,906,356	-		PP_4315	0.44	+0.8
4,906,365	+		PP_4315	0.45	+1.1
4,906,365	+		PP_4315	0.45	+2.2
4,906,365	+		PP_4315	0.45	+0.2
4,906,366	-		PP_4315	0.45	+3.6
4,906,370	+		PP_4315	0.46	-0.5
4,906,371	-		PP_4315	0.46	+0.8
4,906,371	-		PP_4315	0.46	-1.0