Strain Fitness in Pseudomonas putida KT2440 around PP_4240

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
4,813,475	-		PP_5666	0.81	+1.1
4,813,632	-				-1.1
4,813,721	+		PP_5667	0.11	+0.6
4,813,721	+		PP_5667	0.11	-1.1
4,813,962	+		PP_5667	0.41	+0.8
4,814,203	+		PP_5667	0.71	-2.2
4,814,207	+		PP_5667	0.72	-1.2
4,814,241	-				+0.8
4,814,288	+		PP_5667	0.82	+0.7
4,814,349	-				+1.8
4,814,350	+				-3.7
4,814,486	+				+0.2
4,814,547	+				+1.2
4,814,547	+				-0.4
4,814,656	+		PP_4240	0.19	+1.2
4,814,772	+		PP_4240	0.28	+1.3
4,814,864	+		PP_4240	0.36	+0.4
4,814,897	+		PP_4240	0.39	-2.0
4,815,084	-		PP_4240	0.54	-1.5
4,815,125	-		PP_4240	0.58	+1.8
4,815,130	-		PP_4240	0.58	-3.1
4,815,130	-		PP_4240	0.58	-0.3
4,815,181	-		PP_4240	0.62	+0.6
4,815,657	+				-0.2
4,815,756	+		PP_5668	0.17	-0.0
4,815,757	-		PP_5668	0.17	-1.2
4,815,797	+		PP_5668	0.22	-1.5
4,815,797	+		PP_5668	0.22	+0.6
4,815,797	+		PP_5668	0.22	-1.5
4,815,821	+		PP_5668	0.25	-0.2
4,815,822	-		PP_5668	0.26	-2.1
4,815,822	-		PP_5668	0.26	+2.4
4,815,827	+		PP_5668	0.26	+0.3
4,815,828	-		PP_5668	0.26	-2.1
4,815,828	-		PP_5668	0.26	-1.2
4,815,866	+		PP_5668	0.31	+0.8
4,815,911	+		PP_5668	0.38	+0.7
4,815,991	-		PP_5668	0.48	-0.4
4,815,991	-		PP_5668	0.48	+3.6
4,816,047	-		PP_5668	0.56	-0.3
4,816,074	-		PP_5668	0.59	+2.7
4,816,389	+				-0.6
4,816,452	-		PP_5669	0.11	+1.1
4,816,617	+		PP_5669	0.34	-0.8