Strain Fitness in Pseudomonas putida KT2440 around PP_4224

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
4,795,887	-		PP_4223	0.59	-0.8
4,795,893	-		PP_4223	0.60	+1.8
4,795,998	-		PP_4223	0.67	-2.0
4,796,363	+				-0.6
4,796,453	-				+3.2
4,796,488	+				-1.0
4,796,489	-				+2.2
4,796,489	-				+0.4
4,796,489	-				-1.2
4,796,681	+				-1.9
4,796,710	+				+0.4
4,796,711	-				+0.8
4,796,711	-				+0.5
4,796,711	-				-2.6
4,796,711	-				-3.2
4,796,994	+		PP_4224	0.25	+1.9
4,796,994	+		PP_4224	0.25	+1.6
4,797,031	+		PP_4224	0.28	+0.8
4,797,129	-		PP_4224	0.35	+2.1
4,797,129	-		PP_4224	0.35	+0.3
4,797,129	-		PP_4224	0.35	+1.5
4,797,612	+		PP_4224	0.72	+2.4
4,797,613	-		PP_4224	0.72	-3.3
4,797,613	-		PP_4224	0.72	-0.3
4,797,613	-		PP_4224	0.72	+1.4
4,797,617	-		PP_4224	0.72	+3.2
4,798,127	+		PP_4225	0.22	+5.5
4,798,127	+		PP_4225	0.22	+1.5
4,798,127	+		PP_4225	0.22	-3.2
4,798,251	+		PP_4225	0.40	-0.1
4,798,263	-		PP_4225	0.42	+1.3
4,798,324	-		PP_4225	0.50	-0.6
4,798,370	+		PP_4225	0.57	-1.0
4,798,370	+		PP_4225	0.57	+0.8
4,798,691	+				-1.7
4,798,691	+				+0.0
4,798,711	-				+1.0
4,798,721	+				+0.3
4,798,721	+				+0.8
4,798,721	+				-0.8
4,798,845	+				-0.2