Strain Fitness in Pseudomonas putida KT2440 around PP_4113

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
4,648,453	+		PP_4112	0.53	+1.3
4,648,573	+		PP_4112	0.61	-1.4
4,648,573	+		PP_4112	0.61	-1.1
4,648,573	+		PP_4112	0.61	-0.2
4,648,574	-		PP_4112	0.61	-0.4
4,648,574	-		PP_4112	0.61	-0.5
4,648,574	-		PP_4112	0.61	-1.2
4,648,645	+		PP_4112	0.66	+0.8
4,648,645	+		PP_4112	0.66	+0.3
4,648,646	-		PP_4112	0.66	-2.6
4,648,646	-		PP_4112	0.66	+0.6
4,648,646	-		PP_4112	0.66	+3.6
4,648,646	-		PP_4112	0.66	-3.5
4,648,880	-		PP_4112	0.82	-0.9
4,648,880	-		PP_4112	0.82	+2.3
4,648,982	+		PP_4112	0.89	-1.3
4,649,002	+				+0.9
4,649,003	-				-0.1
4,649,175	+				+2.4
4,649,419	+		PP_4113	0.13	-0.2
4,649,519	+		PP_4113	0.18	+0.8
4,649,677	-		PP_4113	0.28	-1.0
4,649,677	-		PP_4113	0.28	-2.2
4,649,957	+		PP_4113	0.44	-1.8
4,649,957	+		PP_4113	0.44	-1.0
4,649,957	+		PP_4113	0.44	-0.1
4,649,957	+		PP_4113	0.44	-1.1
4,649,958	-		PP_4113	0.44	-0.3
4,650,078	+		PP_4113	0.51	+0.8
4,650,078	+		PP_4113	0.51	-1.2
4,650,078	+		PP_4113	0.51	+1.2
4,650,115	-		PP_4113	0.53	-1.2
4,650,219	+		PP_4113	0.59	+0.8
4,650,219	+		PP_4113	0.59	-0.8
4,650,220	-		PP_4113	0.59	-0.9
4,650,414	+		PP_4113	0.71	-2.3
4,650,415	-		PP_4113	0.71	-1.1
4,650,456	+		PP_4113	0.73	+2.4
4,650,461	-		PP_4113	0.74	+0.1
4,650,495	+		PP_4113	0.75	-1.4
4,650,531	+		PP_4113	0.78	-1.7
4,650,531	+		PP_4113	0.78	-0.0
4,650,531	+		PP_4113	0.78	+0.5
4,650,531	+		PP_4113	0.78	-2.3
4,650,531	+		PP_4113	0.78	+2.4
4,650,531	+		PP_4113	0.78	-0.3
4,650,532	-		PP_4113	0.78	+0.6
4,650,532	-		PP_4113	0.78	-1.4
4,650,532	-		PP_4113	0.78	-0.6
4,650,532	-		PP_4113	0.78	+0.5
4,650,532	-		PP_4113	0.78	+0.9
4,650,532	-		PP_4113	0.78	-1.4
4,650,747	-				-0.9
4,650,887	+				-3.4
4,650,888	-				+2.8
4,650,948	+				-1.5
4,651,034	+				+1.8
4,651,058	-				-0.3
4,651,097	-		PP_4114	0.11	-1.5
4,651,097	-		PP_4114	0.11	-2.0
4,651,173	+		PP_4114	0.18	-0.4
4,651,222	+		PP_4114	0.22	+0.2
4,651,222	+		PP_4114	0.22	-0.6
4,651,223	-		PP_4114	0.22	+1.4
4,651,223	-		PP_4114	0.22	+1.3
4,651,223	-		PP_4114	0.22	+1.0
4,651,245	+		PP_4114	0.24	-0.2
4,651,245	+		PP_4114	0.24	-0.1
4,651,246	-		PP_4114	0.24	-1.7
4,651,246	-		PP_4114	0.24	+1.1
4,651,353	+		PP_4114	0.33	-0.3
4,651,412	+		PP_4114	0.38	-0.4
4,651,412	+		PP_4114	0.38	-2.9
4,651,412	+		PP_4114	0.38	-1.4
4,651,412	+		PP_4114	0.38	-0.3
4,651,412	+		PP_4114	0.38	-0.5
4,651,413	-		PP_4114	0.38	-0.3
4,651,413	-		PP_4114	0.38	-0.6
4,651,487	+		PP_4114	0.44	-2.9
4,651,488	-		PP_4114	0.44	-0.8
4,651,488	-		PP_4114	0.44	+0.9
4,651,488	-		PP_4114	0.44	-1.1
4,651,488	-		PP_4114	0.44	-1.1
4,651,578	+		PP_4114	0.52	-2.2
4,651,579	-		PP_4114	0.52	+0.8
4,651,579	-		PP_4114	0.52	-1.1
4,651,579	-		PP_4114	0.52	+1.2
4,651,665	+		PP_4114	0.59	+1.4
4,651,665	+		PP_4114	0.59	-2.4
4,651,666	-		PP_4114	0.59	+4.9
4,651,714	+		PP_4114	0.64	-1.2
4,651,714	+		PP_4114	0.64	+2.1
4,651,714	+		PP_4114	0.64	-0.2
4,651,715	-		PP_4114	0.64	+0.3
4,651,717	+		PP_4114	0.64	+0.8
4,651,717	+		PP_4114	0.64	-1.5
4,651,717	+		PP_4114	0.64	-0.2
4,651,717	+		PP_4114	0.64	-0.4
4,651,718	-		PP_4114	0.64	+0.2
4,651,718	-		PP_4114	0.64	-0.7
4,651,718	-		PP_4114	0.64	+1.1
4,651,732	+		PP_4114	0.65	-1.7
4,651,733	-		PP_4114	0.65	-1.0
4,651,733	-		PP_4114	0.65	-2.9
4,651,768	-		PP_4114	0.68	-0.8