Strain Fitness in Pseudomonas putida KT2440 around PP_4078

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
4,605,611	-		PP_4077	0.58	-1.1
4,605,692	+		PP_4077	0.63	-2.0
4,605,776	+		PP_4077	0.67	-0.8
4,605,776	+		PP_4077	0.67	+1.9
4,605,776	+		PP_4077	0.67	+0.9
4,605,777	-		PP_4077	0.67	+0.4
4,605,777	-		PP_4077	0.67	+1.4
4,605,777	-		PP_4077	0.67	+0.7
4,605,780	+		PP_4077	0.68	+0.4
4,605,780	+		PP_4077	0.68	-1.1
4,605,780	+		PP_4077	0.68	-3.1
4,605,781	-		PP_4077	0.68	+1.6
4,605,897	-				+2.5
4,605,897	-		PP_4077	0.74	-0.4
4,605,897	-		PP_4077	0.74	-1.1
4,605,897	-		PP_4077	0.74	-0.2
4,605,897	-		PP_4077	0.74	+1.7
4,605,898	+		PP_4077	0.74	+3.9
4,605,898	+		PP_4077	0.74	+0.0
4,605,898	+		PP_4077	0.74	-2.0
4,605,986	+		PP_4077	0.79	-1.9
4,606,035	-		PP_4077	0.82	-0.6
4,606,149	+		PP_4077	0.89	+1.5
4,606,150	-		PP_4077	0.89	+1.1
4,606,150	-		PP_4077	0.89	-0.7
4,606,150	-		PP_4077	0.89	+0.2
4,606,211	+				-0.2
4,606,212	-				+1.9
4,606,212	-				+0.3
4,606,212	-				+1.9
4,606,251	-				+3.1
4,606,310	+				+1.9
4,606,310	+				-0.6
4,606,310	+				+0.7
4,606,310	+				-0.6
4,606,310	+				-1.8
4,606,310	+				-0.4
4,606,310	+				+0.5
4,606,310	+				-3.8
4,606,311	-				-1.2
4,606,311	-				+1.9
4,606,311	-				+0.9
4,606,311	-				-2.8
4,606,311	-				+0.9
4,606,519	+		PP_4078	0.20	+0.3
4,606,519	+		PP_4078	0.20	+2.1
4,606,519	+		PP_4078	0.20	+0.5
4,606,519	+		PP_4078	0.20	+0.8
4,606,520	-		PP_4078	0.20	+0.9
4,606,612	+		PP_4078	0.29	-0.4
4,606,612	+		PP_4078	0.29	-2.3
4,606,612	+		PP_4078	0.29	-2.2
4,606,613	-		PP_4078	0.29	+0.2
4,606,613	-		PP_4078	0.29	-1.2
4,606,613	-		PP_4078	0.29	+1.6
4,606,613	-		PP_4078	0.29	+0.4
4,606,613	-		PP_4078	0.29	-0.7
4,606,616	-		PP_4078	0.30	-1.9
4,606,616	-		PP_4078	0.30	-3.3
4,606,633	+		PP_4078	0.31	-0.8
4,606,634	-		PP_4078	0.31	-1.0
4,606,634	-		PP_4078	0.31	+1.0
4,606,634	-		PP_4078	0.31	-2.7
4,606,690	+		PP_4078	0.37	-0.3
4,606,690	+		PP_4078	0.37	-2.6
4,606,727	-		PP_4078	0.41	-1.8
4,606,733	-		PP_4078	0.41	-0.2
4,606,735	+		PP_4078	0.41	+0.0
4,606,735	+		PP_4078	0.41	-1.5
4,606,735	+		PP_4078	0.41	-1.7
4,606,735	+		PP_4078	0.41	-3.8
4,606,735	+		PP_4078	0.41	-1.7
4,606,735	+		PP_4078	0.41	+0.0
4,606,736	-		PP_4078	0.41	+0.6
4,606,736	-		PP_4078	0.41	+0.9
4,606,736	-		PP_4078	0.41	-0.2
4,606,736	-		PP_4078	0.41	-0.3
4,606,736	-		PP_4078	0.41	-1.5
4,606,736	-		PP_4078	0.41	+0.1
4,606,736	-		PP_4078	0.41	-0.1
4,606,736	-		PP_4078	0.41	+0.8
4,606,736	-		PP_4078	0.41	-1.1
4,606,736	-		PP_4078	0.41	-1.4
4,606,777	+		PP_4078	0.45	+0.6
4,606,777	+		PP_4078	0.45	+0.9
4,606,777	+		PP_4078	0.45	-0.2
4,606,778	-		PP_4078	0.46	+1.9
4,606,778	-		PP_4078	0.46	+1.0
4,606,778	-		PP_4078	0.46	-0.8
4,606,778	-		PP_4078	0.46	-1.1
4,606,991	+		PP_4078	0.66	-1.8
4,606,991	+		PP_4078	0.66	+0.9
4,607,185	+		PP_4078	0.86	-2.7
4,607,185	+		PP_4078	0.86	-0.7
4,607,185	+		PP_4078	0.86	-1.5
4,607,186	-		PP_4078	0.86	-1.4
4,607,186	-		PP_4078	0.86	-1.4
4,607,186	-		PP_4078	0.86	-1.9
4,607,254	+				-1.7
4,607,435	-		PP_4079	0.13	-1.1
4,607,733	+		PP_4079	0.51	+0.2
4,607,733	+		PP_4079	0.51	-0.7
4,607,733	+		PP_4079	0.51	-0.1
4,607,734	-		PP_4079	0.51	+2.5
4,607,734	-		PP_4079	0.51	+1.6
4,607,734	-		PP_4079	0.51	-0.1
4,607,734	-		PP_4079	0.51	+0.6
4,607,734	-		PP_4079	0.51	+1.2
4,607,734	-		PP_4079	0.51	-0.4
4,607,734	-		PP_4079	0.51	+2.1
4,607,859	+		PP_4079	0.67	-4.0
4,607,900	+		PP_4079	0.72	+1.9
4,607,901	-		PP_4079	0.72	-1.2
4,607,905	-		PP_4079	0.72	-1.1
4,607,905	-		PP_4079	0.72	-1.2
4,607,905	-		PP_4079	0.72	+2.4
4,607,923	-		PP_4079	0.75	+0.0
4,607,954	-		PP_4079	0.78	+0.9
4,608,006	+		PP_4079	0.85	+0.3
4,608,186	+				+1.8
4,608,187	-				+3.2
4,608,187	-				-3.6
4,608,302	-				-0.1
4,608,302	-				+2.9
4,608,323	+		PP_4080	0.11	+2.5
4,608,323	+		PP_4080	0.11	+1.2
4,608,323	+		PP_4080	0.11	+1.8
4,608,324	-		PP_4080	0.11	-1.0