Strain Fitness in Pseudomonas putida KT2440 around PP_3861

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
4,384,590	+				+0.0
4,384,591	-				-2.7
4,384,612	-		PP_3860	0.11	-2.2
4,384,612	-		PP_3860	0.11	+0.5
4,384,623	-		PP_3860	0.13	-0.7
4,384,757	+		PP_3860	0.25	+0.9
4,384,757	+		PP_3860	0.25	-0.2
4,384,758	-		PP_3860	0.25	-1.5
4,384,758	-		PP_3860	0.25	-0.3
4,384,758	-		PP_3860	0.25	-1.3
4,384,758	-		PP_3860	0.25	-0.7
4,384,758	-		PP_3860	0.25	+2.1
4,384,793	+		PP_3860	0.29	-0.4
4,384,793	+		PP_3860	0.29	-0.6
4,384,793	+		PP_3860	0.29	-1.6
4,384,794	-		PP_3860	0.29	-1.4
4,384,794	-		PP_3860	0.29	+3.2
4,384,873	-		PP_3860	0.36	+2.2
4,385,164	-		PP_3860	0.64	-0.0
4,385,250	+		PP_3860	0.73	-0.2
4,385,253	+		PP_3860	0.73	+0.6
4,385,253	+		PP_3860	0.73	-1.8
4,385,396	+		PP_3860	0.87	+0.8
4,385,397	-		PP_3860	0.87	-3.7
4,385,397	-		PP_3860	0.87	-0.1
4,385,405	+		PP_3860	0.87	-2.1
4,385,405	+		PP_3860	0.87	-2.8
4,385,419	-		PP_3860	0.89	-0.6
4,385,528	+				-0.3
4,385,528	+				+1.3
4,385,551	+				-0.7
4,385,552	-				+2.8
4,385,597	+		PP_3861	0.19	+1.7
4,385,598	-		PP_3861	0.19	-0.4
4,385,656	+		PP_3861	0.34	+1.6
4,385,700	+		PP_3861	0.45	+0.5
4,385,700	+		PP_3861	0.45	-0.1
4,385,988	+		PP_3862	0.16	-1.3
4,386,037	-		PP_3862	0.26	-0.6
4,386,149	+		PP_3862	0.48	+0.9
4,386,149	+		PP_3862	0.48	-0.2
4,386,150	-		PP_3862	0.48	+0.9
4,386,150	-		PP_3862	0.48	+0.4
4,386,150	-		PP_3862	0.48	+0.6
4,386,338	-		PP_3862	0.86	+0.7
4,386,398	-				-2.3
4,386,427	+				-1.4
4,386,445	+				+0.1
4,386,446	-				-1.8
4,386,493	+				-0.1
4,386,494	-				+0.5
4,386,574	+		PP_3863	0.14	+0.9
4,386,575	-		PP_3863	0.14	-0.1
4,386,575	-		PP_3863	0.14	+1.8
4,386,575	-		PP_3863	0.14	-1.3
4,386,575	-		PP_3863	0.14	-2.7
4,386,691	+		PP_3863	0.25	-1.9
4,386,691	+		PP_3863	0.25	+2.0
4,386,692	-		PP_3863	0.25	-0.5