Strain Fitness in Pseudomonas putida KT2440 around PP_3747

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
4,275,608	+				+0.4
4,275,609	-				-1.1
4,275,674	-		PP_3746	0.12	-1.2
4,275,708	+		PP_3746	0.16	-0.9
4,275,709	-		PP_3746	0.16	+1.8
4,275,709	-		PP_3746	0.16	-1.9
4,275,728	-		PP_3746	0.18	-2.1
4,275,905	-		PP_3746	0.34	-0.1
4,276,069	+		PP_3746	0.50	+0.2
4,276,182	+		PP_3746	0.61	-0.4
4,276,183	-		PP_3746	0.61	-0.3
4,276,471	-		PP_3746	0.88	-0.1
4,276,521	+				-2.5
4,276,619	+				-0.5
4,276,681	+				+0.9
4,276,681	+				-0.1
4,276,681	+				+0.6
4,276,682	-				+0.5
4,276,716	+				+0.1
4,276,716	+				-0.5
4,276,761	+		PP_3747	0.13	+0.9
4,276,762	-		PP_3747	0.13	-0.1
4,276,762	-		PP_3747	0.13	+2.5
4,276,875	+		PP_3747	0.22	+1.2
4,276,876	-		PP_3747	0.22	-0.7
4,277,033	-		PP_3747	0.35	+2.2
4,277,157	-		PP_3747	0.45	-0.1
4,277,292	-		PP_3747	0.56	+0.3
4,277,333	+		PP_3747	0.59	+0.8
4,277,376	+		PP_3747	0.62	-0.2
4,277,407	-		PP_3747	0.65	+0.1
4,277,407	-		PP_3747	0.65	+2.1
4,277,643	+		PP_3747	0.84	-1.0
4,277,643	+		PP_3747	0.84	+3.7
4,277,677	+		PP_3747	0.87	+1.2
4,277,677	+		PP_3747	0.87	-2.2
4,277,740	+				+0.0
4,277,740	+				+0.7
4,277,740	+				+1.4
4,277,740	+				+1.4
4,277,741	-				+0.2
4,277,741	-				-0.5
4,277,741	-				+1.2
4,277,741	-				+1.7
4,277,838	+				-2.9
4,277,838	+				-0.2
4,277,998	+		PP_3748	0.41	+0.2
4,277,998	+		PP_3748	0.41	-0.7
4,278,170	+		PP_3748	0.84	+1.4
4,278,171	-		PP_3748	0.85	-0.0
4,278,229	+				+0.8
4,278,229	+				+1.2
4,278,230	-				+0.5
4,278,262	+				+0.9
4,278,262	+				-0.4
4,278,262	+				+0.9
4,278,263	-				-2.4
4,278,263	-				-0.1
4,278,263	-				+1.7
4,278,297	-				+0.8
4,278,583	+		PP_3749	0.63	-0.1
4,278,583	+		PP_3749	0.63	-0.3
4,278,583	+		PP_3749	0.63	+1.8
4,278,583	+		PP_3749	0.63	-1.7
4,278,584	-		PP_3749	0.63	-1.7
4,278,584	-		PP_3749	0.63	-2.5
4,278,584	-		PP_3749	0.63	+2.3
4,278,584	-		PP_3749	0.63	+0.6
4,278,584	-		PP_3749	0.63	+1.5
4,278,584	-		PP_3749	0.63	-2.5
4,278,680	+				+0.4
4,278,680	+				-1.7
4,278,680	+				-0.1
4,278,681	-				-2.0
4,278,681	-				-1.5
4,278,682	+				+1.2
4,278,683	-				+0.7
4,278,683	-				+0.9
4,278,683	-				-2.1