Strain Fitness in Pseudomonas putida KT2440 around PP_3740

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
4,266,989	+				+0.9
4,266,989	+		PP_3739	0.31	+1.3
4,266,989	+		PP_3739	0.31	-0.6
4,266,989	+		PP_3739	0.31	-2.3
4,266,989	+		PP_3739	0.31	-0.1
4,267,148	+		PP_3739	0.43	+1.3
4,267,149	-		PP_3739	0.43	-0.1
4,267,160	+		PP_3739	0.44	+5.1
4,267,160	+		PP_3739	0.44	+0.8
4,267,160	+		PP_3739	0.44	+0.9
4,267,161	-		PP_3739	0.44	-0.9
4,267,235	+		PP_3739	0.50	-2.6
4,267,280	-		PP_3739	0.54	-0.1
4,267,280	-		PP_3739	0.54	-2.2
4,267,412	+		PP_3739	0.64	+0.1
4,267,470	+		PP_3739	0.69	-1.4
4,267,470	+		PP_3739	0.69	-1.2
4,267,471	-		PP_3739	0.69	+0.3
4,267,471	-		PP_3739	0.69	-0.7
4,267,471	-		PP_3739	0.69	+0.0
4,267,471	-		PP_3739	0.69	+0.0
4,267,471	-		PP_3739	0.69	-0.5
4,267,471	-		PP_3739	0.69	+0.8
4,267,502	+		PP_3739	0.72	-1.0
4,267,503	-		PP_3739	0.72	-1.7
4,267,503	-		PP_3739	0.72	+0.9
4,267,558	-		PP_3739	0.76	-0.7
4,267,631	+		PP_3739	0.82	+0.0
4,267,631	+		PP_3739	0.82	-1.1
4,267,721	+		PP_3739	0.89	-1.9
4,267,722	-		PP_3739	0.89	+1.0
4,267,725	-		PP_3739	0.89	-0.5
4,267,858	+				-1.7
4,267,858	+				+1.9
4,267,859	-				-2.0
4,267,859	-				+0.2
4,267,859	-				+1.5
4,267,859	-				-2.8
4,267,861	+				-0.1
4,267,861	+				+0.9
4,267,862	-				+0.5
4,267,862	-				+1.7
4,267,881	-				-0.9
4,267,881	-				-0.6
4,267,881	-				-0.1
4,267,922	+				-0.1
4,267,922	+				-1.4
4,267,923	-				+3.7
4,267,956	-				-1.2
4,267,956	-				-1.8
4,268,066	+				+0.9
4,268,067	-				-0.5
4,268,067	-				-1.1
4,268,177	-		PP_3740	0.16	-0.3
4,268,189	+		PP_3740	0.17	-1.8
4,268,189	+		PP_3740	0.17	-0.4
4,268,190	-		PP_3740	0.17	+0.2
4,268,190	-		PP_3740	0.17	-1.6
4,268,190	-		PP_3740	0.17	+1.9
4,268,210	+		PP_3740	0.19	-0.1
4,268,211	-		PP_3740	0.19	+1.2
4,268,211	-		PP_3740	0.19	-2.1
4,268,728	+		PP_3740	0.57	-0.0
4,268,728	+		PP_3740	0.57	-0.7
4,268,728	+		PP_3740	0.57	-3.3
4,268,729	-		PP_3740	0.57	+3.2
4,268,770	-		PP_3740	0.60	-3.1
4,268,774	-		PP_3740	0.61	-1.3
4,268,894	+		PP_3740	0.70	-2.1
4,268,895	-		PP_3740	0.70	+1.1
4,268,895	-		PP_3740	0.70	-1.4
4,269,231	+				+1.8
4,269,231	+				-1.1
4,269,232	-				+1.3
4,269,232	-				+0.6
4,269,232	-				+1.1
4,269,295	-				+1.9
4,269,424	+				-1.1
4,269,520	-				+1.4
4,269,524	-				-1.0
4,269,714	+				-1.8
4,269,714	+				-1.8
4,269,833	-				+0.6
4,269,978	+				+0.9
4,269,978	+				+1.9
4,269,979	-				-0.7
4,269,979	-				+2.5
4,269,979	-				+3.5
4,269,982	+				+0.7
4,269,982	+				+0.1
4,269,983	-				+1.5
4,270,094	-		PP_3741	0.12	+2.3
4,270,211	+		PP_3741	0.18	+0.1
4,270,211	+		PP_3741	0.18	-0.3
4,270,212	-		PP_3741	0.19	-0.1
4,270,212	-		PP_3741	0.19	+0.5
4,270,268	+		PP_3741	0.21	+0.8
4,270,269	-		PP_3741	0.22	-1.1
4,270,269	-		PP_3741	0.22	-2.7