Strain Fitness in Pseudomonas putida KT2440 around PP_3619

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
4,112,432	-		PP_3618	0.24	-0.1
4,112,446	-		PP_3618	0.26	+0.2
4,112,510	-		PP_3618	0.33	+2.0
4,112,566	+		PP_3618	0.39	+0.4
4,112,567	-		PP_3618	0.39	+0.2
4,112,585	+		PP_3618	0.41	+0.4
4,112,591	+		PP_3618	0.42	-0.9
4,112,666	-		PP_3618	0.50	+0.2
4,112,666	-		PP_3618	0.50	-1.2
4,112,666	-		PP_3618	0.50	+0.9
4,112,666	-		PP_3618	0.50	+0.5
4,113,183	+				+1.0
4,113,183	+				+0.9
4,113,184	-				+0.3
4,113,184	-				-2.2
4,113,195	+				-0.6
4,113,195	+				+0.4
4,113,196	-				+0.5
4,113,196	-				-0.7
4,113,218	-				-0.0
4,113,235	+				-1.5
4,113,294	+				+0.9
4,113,452	-		PP_3619	0.11	+1.0
4,113,473	+		PP_3619	0.13	-0.5
4,113,517	-				+0.9
4,113,517	-		PP_3619	0.18	-2.3
4,113,552	+		PP_3619	0.22	+3.7
4,113,604	+		PP_3619	0.28	+2.6
4,113,605	-		PP_3619	0.28	+1.3
4,113,605	-		PP_3619	0.28	+0.7
4,113,737	+		PP_3619	0.42	-2.0
4,113,808	-		PP_3619	0.50	-0.6
4,113,823	-		PP_3619	0.52	+1.0
4,113,823	-		PP_3619	0.52	-0.7
4,114,143	+		PP_3619	0.88	+1.7
4,114,144	-		PP_3619	0.88	+0.4
4,114,144	-		PP_3619	0.88	+1.5
4,114,144	-		PP_3619	0.88	+1.3
4,114,170	+				-2.5
4,114,170	+				-1.1
4,114,171	-				-1.2
4,114,171	-				+0.7
4,114,171	-				+0.0
4,114,242	-				+2.2
4,114,251	+				-0.9
4,114,252	-				-2.0
4,114,286	-				-0.8
4,114,354	+				-0.3
4,114,354	+				+1.1
4,114,354	+				-1.7
4,114,436	+				+0.9
4,114,436	+				+0.9
4,114,436	+				-0.9
4,114,437	-				+0.9
4,114,437	-				-1.8
4,114,437	-				+0.8
4,114,563	+				+0.1
4,114,564	-				+0.6
4,114,643	+		PP_3620	0.11	+1.0
4,114,660	+		PP_3620	0.12	-2.3
4,114,823	+		PP_3620	0.19	-0.4
4,114,823	+		PP_3620	0.19	-0.4
4,114,823	+		PP_3620	0.19	-2.4
4,114,824	-		PP_3620	0.19	-1.0
4,114,824	-		PP_3620	0.19	+0.9
4,114,824	-		PP_3620	0.19	-1.7
4,115,018	+		PP_3620	0.28	+0.0
4,115,018	+		PP_3620	0.28	+0.2
4,115,019	-		PP_3620	0.28	+0.9
4,115,030	+		PP_3620	0.29	+0.9
4,115,030	+		PP_3620	0.29	+2.1
4,115,030	+		PP_3620	0.29	-1.3
4,115,030	+		PP_3620	0.29	-0.7
4,115,030	+		PP_3620	0.29	+0.4
4,115,031	-		PP_3620	0.29	+2.2
4,115,031	-		PP_3620	0.29	+0.9
4,115,176	-		PP_3620	0.36	-1.2