Strain Fitness in Pseudomonas putida KT2440 around PP_3556

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
4,032,714	+		PP_3555	0.35	+2.4
4,032,715	-		PP_3555	0.35	+3.1
4,032,715	-		PP_3555	0.35	+4.0
4,032,775	+		PP_3555	0.41	-0.8
4,032,775	+		PP_3555	0.41	+1.8
4,032,813	+		PP_3555	0.45	-2.9
4,032,813	+		PP_3555	0.45	+0.8
4,032,814	-		PP_3555	0.45	+0.8
4,032,951	+		PP_3555	0.58	-2.3
4,033,098	+		PP_3555	0.73	+0.0
4,033,098	+		PP_3555	0.73	+4.0
4,033,099	-		PP_3555	0.73	+0.2
4,033,099	-		PP_3555	0.73	-1.5
4,033,099	-		PP_3555	0.73	+0.8
4,033,245	+		PP_3555	0.88	+0.8
4,033,246	-		PP_3555	0.88	-1.8
4,033,246	-		PP_3555	0.88	-2.3
4,033,246	-		PP_3555	0.88	+0.8
4,033,303	-				-0.8
4,033,385	+				+0.8
4,033,385	+				-1.3
4,033,386	-				+1.8
4,033,386	-				+0.8
4,033,386	-				-2.1
4,033,434	-				+1.0
4,033,434	-				-2.5
4,033,434	-				-0.2
4,033,560	+		PP_3556	0.13	-2.1
4,033,578	+		PP_3556	0.15	-0.5
4,033,579	-		PP_3556	0.15	+4.3
4,034,003	+		PP_3556	0.47	-0.7
4,034,003	+		PP_3556	0.47	-0.9
4,034,004	-		PP_3556	0.47	+1.8
4,034,048	+		PP_3556	0.50	+1.6
4,034,048	+		PP_3556	0.50	-0.6
4,034,049	-		PP_3556	0.50	-0.3
4,034,049	-		PP_3556	0.50	+0.6
4,034,231	+				+0.2
4,034,231	+		PP_3556	0.64	+0.8
4,034,231	+		PP_3556	0.64	-0.2
4,034,232	-		PP_3556	0.64	-2.6
4,034,232	-		PP_3556	0.64	+0.5
4,034,283	+		PP_3556	0.68	-1.8
4,034,304	-		PP_3556	0.70	+0.7
4,034,317	+		PP_3556	0.71	-0.3
4,034,318	-		PP_3556	0.71	+2.2
4,034,522	+		PP_3556	0.86	+0.7
4,034,522	+		PP_3556	0.86	+0.8
4,034,522	+		PP_3556	0.86	+3.1
4,034,523	-		PP_3556	0.86	-0.4
4,034,523	-		PP_3556	0.86	-0.3
4,034,523	-		PP_3556	0.86	+0.7
4,034,666	-				-0.4
4,034,713	-				+0.8
4,034,713	-				+0.8
4,034,910	+				-0.8
4,034,911	-				-0.3
4,034,911	-				+1.1
4,034,925	+				+0.8
4,035,178	+		PP_3557	0.11	+3.8
4,035,178	+		PP_3557	0.11	-1.3
4,035,421	+		PP_3557	0.22	+0.5
4,035,531	-		PP_3557	0.27	-1.2
4,035,564	-		PP_3557	0.29	-0.6
4,035,564	-		PP_3557	0.29	-1.9
4,035,571	+		PP_3557	0.29	-2.6
4,035,571	+		PP_3557	0.29	+0.8
4,035,571	+		PP_3557	0.29	-1.5
4,035,571	+		PP_3557	0.29	-1.4
4,035,572	-		PP_3557	0.29	-1.5
4,035,577	+		PP_3557	0.29	-2.3
4,035,577	+		PP_3557	0.29	+1.2
4,035,584	+		PP_3557	0.30	+0.0
4,035,679	-		PP_3557	0.34	-3.1