Strain Fitness in Pseudomonas putida KT2440 around PP_3543

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
4,013,682	-		PP_3541	0.16	+1.4
4,013,765	+		PP_3541	0.32	-1.1
4,013,815	+		PP_3541	0.42	-1.3
4,014,142	+				-0.6
4,014,199	-				-2.5
4,014,199	-				+2.4
4,014,261	-				-0.4
4,014,519	+				-2.5
4,014,519	+				-0.2
4,014,562	+				+0.0
4,014,605	+				-2.3
4,014,606	-				-0.2
4,014,606	-				-1.3
4,014,654	-				+1.1
4,014,654	-				-0.1
4,014,666	-				+1.2
4,014,725	+				-0.1
4,014,748	-				-2.2
4,014,752	+				-0.8
4,014,752	+				-0.3
4,014,958	-		PP_3543	0.22	-1.2
4,014,981	+		PP_3543	0.24	-0.2
4,015,263	+		PP_3543	0.44	+0.8
4,015,263	+		PP_3543	0.44	+1.4
4,015,264	-		PP_3543	0.44	+0.2
4,015,264	-		PP_3543	0.44	+2.1
4,015,264	-		PP_3543	0.44	-1.4
4,015,264	-		PP_3543	0.44	+0.5
4,015,265	+		PP_3543	0.44	-0.6
4,015,265	+		PP_3543	0.44	-0.2
4,015,266	-		PP_3543	0.44	+2.3
4,015,266	-		PP_3543	0.44	+0.7
4,015,266	-		PP_3543	0.44	+0.5
4,015,591	-		PP_3543	0.67	+0.6
4,015,591	-		PP_3543	0.67	-1.3
4,015,786	-		PP_3543	0.81	+0.6
4,015,786	-		PP_3543	0.81	-3.9
4,015,817	+		PP_3543	0.83	+0.6
4,015,817	+				-1.2
4,015,827	+		PP_3543	0.84	+1.5
4,015,827	+		PP_3543	0.84	+0.6
4,016,054	+				-1.1
4,016,054	+				+2.2
4,016,055	-				+0.4
4,016,055	-				-0.0
4,016,055	-				-0.8
4,016,190	-				-1.8
4,016,237	+				-1.2
4,016,237	+				-0.8
4,016,240	+		PP_3544	0.10	+0.4
4,016,241	-		PP_3544	0.10	-1.2
4,016,241	-		PP_3544	0.10	-1.6
4,016,241	-		PP_3544	0.10	-2.8
4,016,241	-		PP_3544	0.10	-2.1
4,016,241	-		PP_3544	0.10	+0.8
4,016,382	+		PP_3544	0.20	+0.2
4,016,576	+		PP_3544	0.34	-1.8
4,016,577	-				+0.2
4,016,708	+		PP_3544	0.43	+0.7
4,016,708	+		PP_3544	0.43	+0.8
4,016,708	+		PP_3544	0.43	-0.9
4,016,708	+		PP_3544	0.43	+0.2
4,016,708	+		PP_3544	0.43	+0.8
4,016,708	+		PP_3544	0.43	-0.0
4,016,709	-		PP_3544	0.43	+0.4
4,016,709	-		PP_3544	0.43	-0.5
4,016,709	-		PP_3544	0.43	-1.4
4,016,709	-		PP_3544	0.43	+0.1
4,016,709	-		PP_3544	0.43	-1.3
4,016,709	-		PP_3544	0.43	+0.7
4,016,709	-		PP_3544	0.43	-2.5
4,016,709	-		PP_3544	0.43	-0.6
4,016,961	-		PP_3544	0.61	+0.5
4,016,961	-		PP_3544	0.61	-0.3
4,016,961	-		PP_3544	0.61	+2.8
4,016,963	+		PP_3544	0.61	+0.5
4,016,963	+		PP_3544	0.61	+0.8