Strain Fitness in Pseudomonas putida KT2440 around PP_3538

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
4,009,945	+		PP_3537	0.43	+0.2
4,009,946	-		PP_3537	0.43	+2.5
4,009,955	+		PP_3537	0.44	-1.6
4,009,956	-		PP_3537	0.44	-3.5
4,009,956	-		PP_3537	0.44	-1.3
4,009,987	-		PP_3537	0.47	+0.2
4,010,018	+		PP_3537	0.49	-0.3
4,010,019	-		PP_3537	0.49	+1.1
4,010,019	-		PP_3537	0.49	+0.8
4,010,090	+		PP_3537	0.55	-0.5
4,010,091	-		PP_3537	0.55	-2.7
4,010,130	+		PP_3537	0.59	+0.8
4,010,130	+		PP_3537	0.59	+0.8
4,010,131	-		PP_3537	0.59	+0.2
4,010,158	-				+1.8
4,010,159	+		PP_3537	0.61	-1.7
4,010,160	-		PP_3537	0.61	-0.3
4,010,160	-		PP_3537	0.61	-0.0
4,010,160	-				-0.2
4,010,208	-		PP_3537	0.65	-0.9
4,010,256	-		PP_3537	0.69	-0.3
4,010,256	-		PP_3537	0.69	-1.5
4,010,256	-		PP_3537	0.69	+3.8
4,010,476	+				-0.2
4,010,476	+				-0.8
4,010,500	+		PP_3537	0.90	+0.4
4,010,500	+		PP_3537	0.90	+0.8
4,010,501	-				+0.3
4,010,503	+				+0.9
4,010,504	-				-2.2
4,010,504	-				+1.5
4,010,504	-				+0.2
4,010,507	+				+0.5
4,010,507	+				+0.2
4,010,508	-				-1.1
4,010,538	+				-0.8
4,010,598	+				+1.6
4,010,722	+				-1.7
4,010,722	+				+1.0
4,010,722	+				-3.1
4,010,722	+				+2.0
4,010,722	+				-1.2
4,010,722	+				+2.8
4,010,722	+				-0.4
4,010,722	+				+0.5
4,010,722	+				-0.3
4,010,722	+				-1.8
4,010,722	+				-0.5
4,010,722	+				+0.5
4,010,723	-				-1.8
4,010,723	-				-0.3
4,010,723	-				+1.1
4,010,723	-				+1.4
4,010,723	-				-0.7
4,010,723	-				+0.3
4,010,723	-				+1.1
4,010,723	-				+0.2
4,010,723	-				+1.4
4,010,731	+				-1.1
4,010,732	-				+4.1
4,010,732	-				+0.1
4,010,732	-				+0.8
4,010,732	-				+2.8
4,010,732	-				+0.6
4,010,773	-				-1.1
4,010,833	-				-0.7
4,010,955	+		PP_3538	0.18	-0.3
4,010,955	+		PP_3538	0.18	-2.6
4,010,955	+		PP_3538	0.18	+0.8
4,010,955	+		PP_3538	0.18	+3.1
4,010,955	+		PP_3538	0.18	+1.8
4,010,955	+		PP_3538	0.18	-0.8
4,010,955	+		PP_3538	0.18	+1.6
4,010,955	+		PP_3538	0.18	+1.2
4,010,955	+		PP_3538	0.18	+0.8
4,010,955	+		PP_3538	0.18	+1.4
4,010,955	+		PP_3538	0.18	-0.4
4,010,956	-		PP_3538	0.19	+2.4
4,010,956	-		PP_3538	0.19	+1.3
4,010,956	-		PP_3538	0.19	+0.4
4,010,956	-		PP_3538	0.19	+1.3
4,010,956	-		PP_3538	0.19	+1.2
4,010,959	+		PP_3538	0.19	+0.2
4,010,960	-		PP_3538	0.19	-0.7
4,010,960	-		PP_3538	0.19	-0.9
4,011,082	-		PP_3538	0.33	+1.3
4,011,082	-		PP_3538	0.33	+0.8
4,011,098	+		PP_3538	0.35	-0.7
4,011,099	-		PP_3538	0.35	+0.7
4,011,109	+		PP_3538	0.36	-2.2
4,011,109	+		PP_3538	0.36	+1.3
4,011,110	-		PP_3538	0.36	+1.4
4,011,110	-		PP_3538	0.36	+1.5
4,011,229	-		PP_3538	0.50	+1.8
4,011,366	+		PP_3538	0.65	+0.6
4,011,367	-		PP_3538	0.65	+1.6
4,011,367	-		PP_3538	0.65	+1.0
4,011,536	+				+0.8
4,011,536	+		PP_3538	0.85	+0.8
4,011,536	+		PP_3538	0.85	-1.8
4,011,536	+		PP_3538	0.85	-0.0
4,011,537	-		PP_3538	0.85	-0.4
4,011,537	-		PP_3538	0.85	+1.6
4,011,540	+		PP_3538	0.85	+0.1
4,011,670	-				-0.2
4,011,708	-				+0.8
4,011,762	+				+1.8
4,011,762	+				+0.8
4,011,762	+				+0.5
4,011,870	+		PP_3539	0.31	-0.2
4,011,870	+		PP_3539	0.31	-3.3
4,011,870	+		PP_3539	0.31	-0.1
4,012,294	+		PP_3540	0.14	+0.8
4,012,458	-		PP_3540	0.33	+0.8