Strain Fitness in Pseudomonas putida KT2440 around PP_3483

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
3,945,599	-		PP_3482	0.14	+0.2
3,945,635	+		PP_3482	0.18	+0.8
3,945,727	-		PP_3482	0.29	+0.3
3,945,727	-		PP_3482	0.29	-0.4
3,945,727	-		PP_3482	0.29	+0.8
3,945,727	-		PP_3482	0.29	-0.8
3,945,796	+				+0.8
3,945,796	+		PP_3482	0.38	-1.2
3,945,796	+		PP_3482	0.38	+0.2
3,945,796	+		PP_3482	0.38	-0.2
3,945,796	+		PP_3482	0.38	-0.8
3,945,796	+		PP_3482	0.38	-1.4
3,945,797	-		PP_3482	0.38	+0.1
3,945,797	-		PP_3482	0.38	-3.1
3,945,797	-		PP_3482	0.38	-0.3
3,945,797	-		PP_3482	0.38	+0.8
3,945,797	-		PP_3482	0.38	-1.5
3,945,811	+		PP_3482	0.40	-0.0
3,945,811	+		PP_3482	0.40	+1.0
3,945,812	-		PP_3482	0.40	+1.3
3,945,948	+		PP_3482	0.57	-1.7
3,945,961	+		PP_3482	0.58	+1.8
3,945,988	+		PP_3482	0.62	+0.2
3,946,089	+		PP_3482	0.74	+0.2
3,946,089	+		PP_3482	0.74	+1.1
3,946,090	-		PP_3482	0.74	-0.3
3,946,291	-				+1.8
3,946,536	-		PP_3483	0.16	-0.4
3,946,536	-		PP_3483	0.16	+0.8
3,946,638	-		PP_3483	0.21	-0.6
3,946,880	+		PP_3483	0.35	+0.1
3,946,946	+		PP_3483	0.39	-1.1
3,946,947	-		PP_3483	0.39	+2.4
3,946,947	-		PP_3483	0.39	+1.8
3,947,139	+		PP_3483	0.49	-1.8
3,947,139	+		PP_3483	0.49	+1.4
3,947,394	-		PP_3483	0.64	+0.9
3,947,394	-		PP_3483	0.64	+1.1
3,947,443	-		PP_3483	0.66	-0.4
3,947,443	-		PP_3483	0.66	+3.0
3,947,576	+		PP_3483	0.74	+1.2
3,947,596	+		PP_3483	0.75	-0.9
3,947,766	-		PP_3483	0.84	+2.3
3,947,941	+				+0.6
3,947,942	-				-0.5
3,947,942	-				-0.8
3,947,965	+				-0.0
3,947,965	+				-1.4
3,947,965	+				-0.2
3,947,965	+				+0.3
3,947,965	+				-1.2
3,947,965	+				-3.3
3,947,965	+				+0.8
3,947,965	+				-0.8
3,947,966	-				+0.6
3,947,966	-				-1.7
3,947,966	-				-0.7
3,947,966	-				-3.3
3,947,966	-				-0.3
3,948,197	+		PP_3484	0.17	-1.4
3,948,197	+		PP_3484	0.17	-0.2
3,948,198	-		PP_3484	0.17	-2.0
3,948,198	-		PP_3484	0.17	-0.6
3,948,483	-		PP_3484	0.70	+1.5
3,948,496	+		PP_3484	0.73	-4.0
3,948,497	-		PP_3484	0.73	+1.2
3,948,581	+		PP_3484	0.89	-1.4
3,948,581	+		PP_3484	0.89	+0.2
3,948,582	-		PP_3484	0.89	-1.1
3,948,582	-		PP_3484	0.89	+0.1
3,948,622	+				+0.3
3,948,628	+				-2.3
3,948,629	-				+1.0
3,948,629	-				+0.1
3,948,629	-				-1.6
3,948,629	-				-2.4
3,948,658	-				-0.8
3,948,729	-				-0.2
3,948,747	+				+1.8
3,948,843	-				+0.4
3,949,009	+		PP_3485	0.18	-0.3