Strain Fitness in Pseudomonas putida KT2440 around PP_3445

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
3,900,885	-		PP_3443	0.80	-0.2
3,900,892	+		PP_3443	0.80	+2.4
3,900,892	+		PP_3443	0.80	-0.6
3,900,892	+		PP_3443	0.80	-0.2
3,900,893	-		PP_3443	0.80	-1.2
3,900,893	-		PP_3443	0.80	-1.6
3,901,033	+		PP_3443	0.89	-1.2
3,901,033	+		PP_3443	0.89	-2.0
3,901,034	-		PP_3443	0.89	-2.6
3,901,201	+				-0.9
3,901,202	-				-1.6
3,901,202	-				-2.8
3,901,202	-				-2.5
3,901,202	-				-0.1
3,901,223	+				+0.4
3,901,238	+				-0.2
3,901,276	+				-0.2
3,901,276	+				-1.7
3,901,277	-				+1.3
3,901,369	-				+0.5
3,901,407	+		PP_3444	0.17	+0.5
3,901,584	+		PP_3444	0.54	+3.1
3,901,584	+		PP_3444	0.54	+1.0
3,901,584	+		PP_3444	0.54	-1.2
3,901,584	+		PP_3444	0.54	-0.4
3,901,585	-		PP_3444	0.55	-0.1
3,901,642	+		PP_3444	0.66	+0.6
3,901,642	+		PP_3444	0.66	+0.1
3,901,643	-				+1.8
3,901,643	-		PP_3444	0.67	+0.8
3,901,643	-		PP_3444	0.67	-3.4
3,901,837	+				-0.8
3,901,838	-				+0.6
3,901,960	+		PP_3445	0.11	+0.8
3,901,960	+		PP_3445	0.11	+0.2
3,901,961	-				-0.8
3,901,976	-				+0.8
3,901,988	-				+0.8
3,902,334	+		PP_3445	0.42	+1.4
3,902,335	-		PP_3445	0.42	-2.6
3,902,551	+		PP_3445	0.60	-0.2
3,902,552	-		PP_3445	0.60	+0.8
3,902,552	-		PP_3445	0.60	-2.3
3,902,664	+		PP_3445	0.69	+0.6
3,902,672	+		PP_3445	0.70	+1.4
3,902,694	+		PP_3445	0.72	-1.8
3,902,755	-		PP_3445	0.77	+1.8
3,902,816	+		PP_3445	0.82	+0.6
3,902,817	-		PP_3445	0.82	-1.8
3,902,967	+				-0.8
3,903,169	+				-1.2
3,903,170	-				-0.1
3,903,390	+		PP_3446	0.15	+3.4
3,903,391	-				+1.4
3,903,799	+		PP_3446	0.41	-0.6
3,903,800	-				+0.8
3,903,800	-		PP_3446	0.41	-0.2
3,903,800	-		PP_3446	0.41	-0.6
3,903,800	-		PP_3446	0.41	-1.5
3,903,863	-		PP_3446	0.45	+2.2
3,903,867	-		PP_3446	0.45	+2.2
3,903,867	-		PP_3446	0.45	-0.2