Strain Fitness in Pseudomonas putida KT2440 around PP_3385

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
3,831,748	-		PP_3384	0.49	-0.3
3,831,792	+		PP_3384	0.55	+0.9
3,831,793	-		PP_3384	0.55	-1.1
3,831,793	-		PP_3384	0.55	+1.9
3,831,793	-		PP_3384	0.55	-1.1
3,831,793	-		PP_3384	0.55	-2.5
3,832,158	-				-0.3
3,832,223	+				-0.9
3,832,224	-				-0.6
3,832,224	-				+0.9
3,832,272	-				+2.7
3,832,309	+				-2.5
3,832,585	+		PP_3385	0.13	+1.6
3,832,606	+		PP_3385	0.16	+0.9
3,832,607	-		PP_3385	0.16	-2.7
3,832,761	+		PP_3385	0.34	-1.7
3,832,764	+		PP_3385	0.34	-4.6
3,832,765	-		PP_3385	0.34	-0.6
3,832,793	-		PP_3385	0.38	-0.9
3,832,816	+		PP_3385	0.40	-2.3
3,832,817	-		PP_3385	0.40	-0.7
3,833,041	+		PP_3385	0.67	-1.4
3,833,041	+				-0.1
3,833,041	+		PP_3385	0.67	-1.1
3,833,041	+		PP_3385	0.67	-2.0
3,833,151	+		PP_3385	0.80	-1.0
3,833,151	+		PP_3385	0.80	-0.3
3,833,151	+		PP_3385	0.80	-1.0
3,833,152	-		PP_3385	0.80	+0.1
3,833,152	-		PP_3385	0.80	+0.4
3,833,178	+		PP_3385	0.83	-2.1
3,833,178	+		PP_3385	0.83	+2.9
3,833,179	-		PP_3385	0.83	-0.7
3,833,245	+				+0.2
3,833,251	+				+4.4
3,833,251	+				-0.6
3,833,251	+				-1.1
3,833,252	-				+0.9
3,833,254	+				-1.5
3,833,254	+				+0.2
3,833,254	+				+0.9
3,833,255	-				+4.2
3,833,255	-				+2.4
3,833,255	-				+1.3
3,833,260	+				+0.9
3,833,276	+				-2.1
3,833,320	+				+1.9
3,833,445	+				+1.1
3,833,445	+				+0.9
3,833,547	-				+0.9
3,833,837	+		PP_3386	0.23	-0.7
3,833,872	-		PP_3386	0.25	-0.3
3,833,985	-		PP_3386	0.30	-2.3
3,833,985	-		PP_3386	0.30	+0.9
3,834,080	+		PP_3386	0.34	+0.2
3,834,081	-		PP_3386	0.34	-3.3
3,834,081	-		PP_3386	0.34	+0.2
3,834,101	+		PP_3386	0.35	+0.7
3,834,122	+		PP_3386	0.36	-0.1
3,834,122	+		PP_3386	0.36	+1.1
3,834,130	+		PP_3386	0.36	-0.6
3,834,130	+		PP_3386	0.36	+0.9
3,834,131	-		PP_3386	0.37	-0.5
3,834,131	-		PP_3386	0.37	+0.9
3,834,131	-		PP_3386	0.37	+0.2
3,834,131	-		PP_3386	0.37	-0.1
3,834,131	-		PP_3386	0.37	+0.1
3,834,131	-		PP_3386	0.37	-1.3
3,834,155	+		PP_3386	0.38	-0.5
3,834,156	-		PP_3386	0.38	-1.4