Strain Fitness in Pseudomonas putida KT2440 around PP_3260

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
3,692,750	+		PP_3259	0.16	+0.7
3,692,750	+		PP_3259	0.16	-0.1
3,692,750	+		PP_3259	0.16	-0.5
3,692,751	-		PP_3259	0.16	-1.1
3,692,774	+		PP_3259	0.18	-0.4
3,693,031	-		PP_3259	0.43	+0.9
3,693,065	-		PP_3259	0.46	+0.7
3,693,199	+		PP_3259	0.59	+0.9
3,693,200	-		PP_3259	0.59	-0.3
3,693,399	+		PP_3259	0.78	-1.7
3,693,400	-		PP_3259	0.78	+0.9
3,693,400	-		PP_3259	0.78	-1.3
3,693,554	+				-0.2
3,693,555	-				+0.9
3,693,578	+				+2.0
3,693,678	+				+0.1
3,693,714	+				-0.5
3,693,714	+				+3.5
3,693,715	-				+0.0
3,693,824	+				-2.3
3,693,824	+				+0.3
3,693,825	-				-0.4
3,693,828	+				-1.5
3,693,829	-				-1.7
3,693,834	+				-0.7
3,693,834	+				+0.3
3,693,865	+				+3.2
3,693,882	-				+0.1
3,693,904	+				+0.1
3,693,905	-				-1.9
3,693,983	-		PP_3260	0.13	+0.8
3,694,058	+		PP_3260	0.16	+2.1
3,694,059	-		PP_3260	0.16	+2.5
3,694,321	+		PP_3260	0.26	+0.7
3,694,329	+		PP_3260	0.26	-2.1
3,694,329	+		PP_3260	0.26	+0.1
3,694,338	+		PP_3260	0.27	+0.5
3,694,338	+		PP_3260	0.27	+2.1
3,694,338	+		PP_3260	0.27	-1.0
3,694,338	+		PP_3260	0.27	-3.7
3,694,339	-		PP_3260	0.27	+1.6
3,694,339	-		PP_3260	0.27	-0.7
3,694,342	+		PP_3260	0.27	+0.6
3,694,342	+		PP_3260	0.27	+0.1
3,694,343	-		PP_3260	0.27	+0.9
3,694,343	-		PP_3260	0.27	+0.1
3,694,343	-		PP_3260	0.27	+0.1
3,694,343	-		PP_3260	0.27	+1.3
3,694,343	-		PP_3260	0.27	-1.9
3,694,343	-		PP_3260	0.27	-0.9
3,694,459	+		PP_3260	0.32	-2.3
3,694,459	+		PP_3260	0.32	-0.5
3,694,460	-		PP_3260	0.32	-0.7
3,694,460	-		PP_3260	0.32	+0.9
3,694,578	+		PP_3260	0.36	-2.2
3,694,579	-		PP_3260	0.36	-1.5
3,694,847	+		PP_3260	0.47	-0.8
3,694,937	-		PP_3260	0.51	-0.1
3,695,009	-				+0.9
3,695,104	+		PP_3260	0.57	-0.8
3,695,104	+		PP_3260	0.57	+2.3
3,695,150	+		PP_3260	0.59	-1.6
3,695,150	+		PP_3260	0.59	-0.3
3,695,150	+		PP_3260	0.59	+0.9
3,695,151	-		PP_3260	0.59	+4.7
3,695,151	-		PP_3260	0.59	-1.9
3,695,172	+		PP_3260	0.60	+0.9
3,695,172	+		PP_3260	0.60	+1.8
3,695,218	+		PP_3260	0.62	+0.7
3,695,218	+		PP_3260	0.62	-0.2
3,695,218	+		PP_3260	0.62	+2.1
3,695,218	+		PP_3260	0.62	+0.1
3,695,218	+		PP_3260	0.62	-0.7
3,695,218	+		PP_3260	0.62	-0.5
3,695,221	+		PP_3260	0.62	+1.1
3,695,221	+		PP_3260	0.62	-1.7
3,695,222	-		PP_3260	0.62	+1.9
3,695,222	-		PP_3260	0.62	+0.7
3,695,222	-		PP_3260	0.62	-0.1
3,695,438	+		PP_3260	0.71	-0.7
3,695,438	+		PP_3260	0.71	-0.4
3,695,439	-		PP_3260	0.71	+0.2
3,695,464	+		PP_3260	0.72	+0.1
3,695,465	-		PP_3260	0.72	+0.3
3,695,517	+		PP_3260	0.74	-1.4
3,695,517	+		PP_3260	0.74	+2.5
3,695,517	+				+1.6
3,695,518	-		PP_3260	0.74	-1.1
3,695,518	-		PP_3260	0.74	-0.1
3,695,662	+		PP_3260	0.80	+1.3
3,695,807	-		PP_3260	0.86	-0.7
3,695,875	+		PP_3260	0.88	-1.7
3,695,891	+		PP_3260	0.89	+1.4
3,696,146	-				+1.0
3,696,146	-				+4.3
3,696,196	-				-0.4
3,696,196	-				-1.2
3,696,222	+				-1.6
3,696,315	+				-0.9
3,696,315	+				+0.3
3,696,316	-				+0.9
3,696,322	+				+1.9
3,696,322	+				-0.4
3,696,322	+				-0.1
3,696,323	-				+0.9
3,696,834	+		PP_3262	0.35	-2.6
3,696,835	-		PP_3262	0.35	-2.0
3,696,988	+				+0.2
3,697,030	+				-0.4
3,697,031	-				+3.5
3,697,143	-		PP_5595	0.17	-1.3
3,697,143	-		PP_5595	0.17	+0.9
3,697,143	-		PP_5595	0.17	-1.2
3,697,145	+		PP_5595	0.18	+2.5
3,697,145	+				-1.1
3,697,145	+		PP_5595	0.18	-1.7
3,697,146	-		PP_5595	0.18	-0.1
3,697,146	-				+0.9
3,697,146	-		PP_5595	0.18	-2.4
3,697,146	-		PP_5595	0.18	+0.3
3,697,146	-		PP_5595	0.18	-0.8
3,697,146	-		PP_5595	0.18	-1.6