Strain Fitness in Pseudomonas putida KT2440 around PP_3162

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
3,582,524	+		PP_3161	0.44	-0.8
3,582,524	+		PP_3161	0.44	-2.4
3,582,525	-		PP_3161	0.44	+3.5
3,582,530	+		PP_3161	0.44	+0.5
3,582,530	+		PP_3161	0.44	-1.4
3,582,530	+		PP_3161	0.44	-0.4
3,582,531	-		PP_3161	0.44	-0.3
3,582,531	-		PP_3161	0.44	-1.0
3,582,531	-		PP_3161	0.44	+0.9
3,582,582	+		PP_3161	0.48	-0.5
3,582,583	-		PP_3161	0.48	+0.8
3,582,583	-		PP_3161	0.48	-0.2
3,582,583	-		PP_3161	0.48	+0.3
3,582,583	-		PP_3161	0.48	-2.9
3,582,583	-		PP_3161	0.48	-0.5
3,582,602	+		PP_3161	0.49	-2.6
3,582,699	-		PP_3161	0.57	-0.1
3,582,699	-		PP_3161	0.57	-0.9
3,582,764	+		PP_3161	0.61	+1.1
3,582,860	+		PP_3161	0.68	+1.2
3,582,936	-		PP_3161	0.74	+0.6
3,582,936	-		PP_3161	0.74	+1.4
3,582,936	-		PP_3161	0.74	+4.5
3,582,983	-		PP_3161	0.77	-1.7
3,582,992	+		PP_3161	0.78	+0.9
3,583,217	+				-3.3
3,583,218	-				+0.5
3,583,218	-				+0.9
3,583,294	+				-1.3
3,583,295	-				-0.4
3,583,295	-				+1.7
3,583,295	-				-0.1
3,583,295	-				-0.4
3,583,318	+				-2.1
3,583,319	-				+0.7
3,583,373	-		PP_3162	0.18	-0.1
3,583,633	+		PP_3162	0.72	+1.2
3,583,651	+		PP_3162	0.75	+0.9
3,583,651	+		PP_3162	0.75	-1.0
3,583,652	-		PP_3162	0.76	-0.7
3,583,652	-		PP_3162	0.76	-1.2
3,583,652	-		PP_3162	0.76	+0.3
3,583,652	-		PP_3162	0.76	-1.1
3,583,669	+		PP_3162	0.79	-2.0
3,583,669	+		PP_3162	0.79	-1.3
3,583,670	-		PP_3162	0.79	-1.4
3,583,735	+				+1.0
3,583,735	+				-1.0
3,583,736	-				+0.3
3,583,736	-				-2.2
3,583,759	+				-0.3
3,583,759	+				-1.1
3,583,759	+				-1.3
3,584,011	+		PP_3163	0.17	+0.5
3,584,072	-		PP_3163	0.23	+4.6
3,584,263	+		PP_3163	0.42	+0.1
3,584,264	-		PP_3163	0.42	-0.2
3,584,264	-		PP_3163	0.42	+0.6
3,584,306	-		PP_3163	0.46	+0.3
3,584,360	+		PP_3163	0.51	-0.3
3,584,446	+		PP_3163	0.60	-0.9
3,584,446	+		PP_3163	0.60	-0.7
3,584,446	+		PP_3163	0.60	-1.8
3,584,567	-		PP_3163	0.72	-0.3
3,584,629	-		PP_3163	0.78	-1.1
3,584,644	+		PP_3163	0.79	-0.3
3,584,692	+		PP_3163	0.84	+0.1
3,584,692	+		PP_3163	0.84	-4.4
3,584,692	+		PP_3163	0.84	-1.0
3,584,693	-		PP_3163	0.84	+3.5
3,584,693	-		PP_3163	0.84	-1.3
3,584,747	-		PP_3163	0.89	-2.8
3,584,747	-		PP_3163	0.89	-1.1
3,584,747	-		PP_3163	0.89	-0.2
3,584,747	-		PP_3163	0.89	+0.3