Strain Fitness in Pseudomonas putida KT2440 around PP_3160

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
3,579,920	+				+1.9
3,579,920	+				-2.6
3,579,921	-				+0.4
3,579,921	-				-0.2
3,579,935	+				+0.5
3,579,935	+				+2.8
3,579,936	-				-0.4
3,579,952	-				+0.9
3,579,952	-				+0.5
3,579,952	-				-0.2
3,579,952	-				+1.1
3,579,952	-				+0.6
3,580,047	-		PP_3159	0.19	+0.1
3,580,047	-		PP_3159	0.19	-2.4
3,580,091	+		PP_3159	0.24	+1.9
3,580,092	-		PP_3159	0.24	+3.1
3,580,092	-		PP_3159	0.24	+1.1
3,580,138	+		PP_3159	0.28	-1.1
3,580,138	+		PP_3159	0.28	+0.6
3,580,139	-		PP_3159	0.29	+0.1
3,580,209	-		PP_3159	0.36	-0.1
3,580,421	+		PP_3159	0.58	-0.3
3,580,422	-		PP_3159	0.58	-0.9
3,580,506	+		PP_3159	0.67	-0.1
3,580,524	-		PP_3159	0.69	+1.5
3,580,524	-		PP_3159	0.69	-1.6
3,580,601	+		PP_3159	0.77	-0.9
3,580,602	-		PP_3159	0.77	+1.2
3,580,693	+		PP_3159	0.86	-1.6
3,580,694	-		PP_3159	0.87	-2.0
3,580,838	-				-1.4
3,580,838	-				+0.7
3,580,850	+				+1.3
3,580,850	+				-3.4
3,580,850	+				+0.2
3,580,851	-				-0.1
3,580,887	+				-3.1
3,580,887	+				-2.2
3,580,888	-				+0.2
3,580,893	+				-0.4
3,580,894	-				-0.2
3,580,947	+				-0.2
3,580,948	-				-0.7
3,580,977	+				+3.3
3,580,977	+				-0.1
3,580,978	-				-0.7
3,581,058	+		PP_3160	0.16	+1.2
3,581,071	+		PP_3160	0.18	+0.9
3,581,214	+		PP_3160	0.33	-1.1
3,581,214	+		PP_3160	0.33	-1.8
3,581,215	-		PP_3160	0.33	+0.7
3,581,314	-		PP_3160	0.43	+0.6
3,581,314	-		PP_3160	0.43	+1.8
3,581,314	-		PP_3160	0.43	-0.4
3,581,319	+		PP_3160	0.44	+0.6
3,581,385	+		PP_3160	0.51	-0.9
3,581,421	-		PP_3160	0.55	+2.1
3,581,421	-		PP_3160	0.55	-0.0
3,581,454	+		PP_3160	0.58	-0.6
3,581,455	-		PP_3160	0.58	+2.0
3,581,525	+		PP_3160	0.66	+1.4
3,581,584	+		PP_3160	0.72	+2.1
3,581,585	-		PP_3160	0.72	-0.7
3,581,716	+		PP_3160	0.86	-2.1
3,581,717	-		PP_3160	0.86	+2.2
3,581,717	-		PP_3160	0.86	+2.1
3,581,717	-		PP_3160	0.86	+0.2
3,581,717	-		PP_3160	0.86	-1.3
3,581,717	-		PP_3160	0.86	-3.0
3,581,717	-		PP_3160	0.86	-0.1
3,581,717	-		PP_3160	0.86	+1.7
3,581,767	+				-1.5
3,581,835	-				-1.1
3,581,904	-				-0.9
3,581,910	+				-0.6
3,581,911	-				-3.2
3,581,911	-				+1.0
3,581,948	+				+0.2
3,581,990	+				-2.9
3,581,990	+				+0.9
3,581,991	-				-1.3
3,582,072	-		PP_3161	0.10	-3.4
3,582,245	+		PP_3161	0.23	-0.3
3,582,245	+		PP_3161	0.23	+1.4
3,582,245	+		PP_3161	0.23	+2.1
3,582,245	+		PP_3161	0.23	+0.0
3,582,246	-		PP_3161	0.23	-1.0
3,582,246	-		PP_3161	0.23	+0.1
3,582,246	-		PP_3161	0.23	-0.6
3,582,247	+		PP_3161	0.23	+0.1
3,582,247	+		PP_3161	0.23	+0.2
3,582,247	+		PP_3161	0.23	-1.5
3,582,247	+		PP_3161	0.23	+1.3
3,582,248	-		PP_3161	0.23	+0.9
3,582,248	-		PP_3161	0.23	-0.0
3,582,248	-		PP_3161	0.23	+0.9
3,582,524	+		PP_3161	0.44	-0.8
3,582,524	+		PP_3161	0.44	-2.4
3,582,525	-		PP_3161	0.44	+3.5
3,582,530	+		PP_3161	0.44	+0.5
3,582,530	+		PP_3161	0.44	-1.4
3,582,530	+		PP_3161	0.44	-0.4
3,582,531	-		PP_3161	0.44	-0.3
3,582,531	-		PP_3161	0.44	-1.0
3,582,531	-		PP_3161	0.44	+0.9
3,582,582	+		PP_3161	0.48	-0.5
3,582,583	-		PP_3161	0.48	+0.8
3,582,583	-		PP_3161	0.48	-0.2
3,582,583	-		PP_3161	0.48	+0.3
3,582,583	-		PP_3161	0.48	-2.9
3,582,583	-		PP_3161	0.48	-0.5
3,582,602	+		PP_3161	0.49	-2.6
3,582,699	-		PP_3161	0.57	-0.1
3,582,699	-		PP_3161	0.57	-0.9
3,582,764	+		PP_3161	0.61	+1.1