Strain Fitness in Pseudomonas putida KT2440 around PP_3088

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
3,475,883	+		PP_3087	0.67	+0.2
3,475,883	+		PP_3087	0.67	+3.5
3,475,883	+		PP_3087	0.67	-1.0
3,475,884	-		PP_3087	0.67	-1.3
3,475,884	-		PP_3087	0.67	-1.0
3,475,932	+		PP_3087	0.69	+1.0
3,475,932	+		PP_3087	0.69	-0.2
3,475,933	-		PP_3087	0.69	-0.2
3,475,933	-		PP_3087	0.69	+0.1
3,475,973	+		PP_3087	0.71	+1.2
3,475,973	+		PP_3087	0.71	+2.4
3,475,974	-		PP_3087	0.71	-0.5
3,476,121	-				+0.9
3,476,312	+		PP_3087	0.84	+0.9
3,476,312	+		PP_3087	0.84	+0.8
3,476,510	+				+1.9
3,476,510	+				+0.8
3,476,511	-				+0.6
3,476,552	+				-2.3
3,476,552	+				+0.2
3,476,552	+				-2.0
3,476,553	-				-0.6
3,476,553	-				+0.9
3,476,804	+				+0.8
3,476,845	-				+0.9
3,476,869	+				+3.5
3,476,870	-				+4.7
3,476,870	-				+0.1
3,476,996	-		PP_3088	0.11	+0.4
3,477,031	+		PP_3088	0.14	+0.1
3,477,032	-		PP_3088	0.14	+1.3
3,477,198	+		PP_3088	0.29	+1.2
3,477,199	-		PP_3088	0.29	+0.7
3,477,205	-		PP_3088	0.30	-1.0
3,477,387	-		PP_3088	0.47	+1.3
3,477,480	+		PP_3088	0.55	+0.7
3,477,480	+		PP_3088	0.55	-1.7
3,477,480	+		PP_3088	0.55	-2.9
3,477,480	+		PP_3088	0.55	-2.1
3,477,480	+		PP_3088	0.55	-0.7
3,477,480	+		PP_3088	0.55	+0.6
3,477,481	-		PP_3088	0.55	+2.5
3,477,481	-		PP_3088	0.55	+0.9
3,477,481	-		PP_3088	0.55	+1.5
3,477,500	-		PP_3088	0.57	+0.9
3,477,623	-		PP_3088	0.68	+3.2
3,477,836	-		PP_3088	0.88	-2.0
3,477,965	+				+0.2
3,477,965	+				-0.2
3,477,966	-				-1.7
3,477,966	-				+2.3
3,477,966	-				-1.6
3,477,985	+				+2.3
3,477,986	-				-0.4
3,478,062	+				-0.2
3,478,146	+		PP_3089	0.16	-0.3
3,478,146	+		PP_3089	0.16	+1.6
3,478,146	+		PP_3089	0.16	+0.9
3,478,146	+		PP_3089	0.16	-0.5
3,478,146	+		PP_3089	0.16	-0.7
3,478,146	+		PP_3089	0.16	+3.9
3,478,147	-		PP_3089	0.16	+0.4
3,478,533	-		PP_3089	0.87	-1.1
3,478,533	-		PP_3089	0.87	+0.2
3,478,561	+				+0.2
3,478,563	+				-0.6
3,478,563	+				-2.0
3,478,563	+				-0.1
3,478,563	+				-0.8
3,478,563	+				-0.1
3,478,564	-				-0.5
3,478,564	-				-0.5
3,478,564	-				+3.0
3,478,564	-				+0.9
3,478,596	-				-1.5
3,478,596	-				+0.1
3,478,605	+				-0.4
3,478,605	+				-0.8
3,478,605	+				-1.3
3,478,606	-				-2.2
3,478,606	-				+1.2
3,478,661	+				-0.9
3,478,662	-				-3.3
3,478,728	+				-0.1
3,478,729	-				-2.4
3,478,864	+				-1.2
3,478,884	-				+0.9
3,478,884	-				-0.4