Strain Fitness in Pseudomonas putida KT2440 around PP_3060

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
3,439,299	-		PP_3059	0.19	+0.7
3,439,617	-		PP_3059	0.46	+0.7
3,439,617	-		PP_3059	0.46	+3.4
3,439,617	-		PP_3059	0.46	-2.3
3,439,617	-		PP_3059	0.46	+0.4
3,439,724	+		PP_3059	0.55	-0.7
3,439,843	+		PP_3059	0.65	+3.7
3,440,009	+		PP_3059	0.80	+0.0
3,440,009	+		PP_3059	0.80	+0.9
3,440,010	-		PP_3059	0.80	+0.5
3,440,090	+		PP_3059	0.87	-1.3
3,440,142	-				+0.4
3,440,142	-				-0.3
3,440,243	+				+1.3
3,440,244	-				+0.9
3,440,372	+		PP_3060	0.22	-1.7
3,440,372	+		PP_3060	0.22	-0.1
3,440,373	-		PP_3060	0.23	+0.9
3,440,392	+		PP_3060	0.26	-0.2
3,440,652	-		PP_3060	0.77	-0.1
3,440,652	-		PP_3060	0.77	-2.6
3,440,654	+		PP_3060	0.78	-0.9
3,440,655	-		PP_3060	0.78	-0.1
3,440,685	-		PP_3060	0.84	+3.7
3,440,685	-		PP_3060	0.84	-0.6
3,440,685	-		PP_3060	0.84	+0.6
3,440,685	-		PP_3060	0.84	-1.9
3,440,766	-				+0.2
3,441,047	+		PP_3061	0.79	+0.1
3,441,047	+		PP_3061	0.79	+0.6
3,441,047	+		PP_3061	0.79	+0.9
3,441,056	+		PP_3061	0.82	-0.9
3,441,056	+		PP_3061	0.82	-1.1
3,441,056	+		PP_3061	0.82	-0.5
3,441,057	-		PP_3061	0.82	+0.6
3,441,107	+				+0.1
3,441,107	+				+1.0
3,441,107	+				-1.2
3,441,108	-				+2.1
3,441,264	-				+0.9
3,441,680	+		PP_3062	0.13	+2.5
3,441,718	+		PP_3062	0.15	+0.9
3,441,748	+		PP_3062	0.15	+0.7
3,441,748	+		PP_3062	0.15	-0.9